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Clustering is an important tool in data analysis, with K-means being popular for its simplicity and versatility. However, it cannot handle non-linearly separable clusters. Kernel K-means addresses this limitation but requires a large kernel…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-29 Julian Bellavita , Matthew Rubino , Nakul Iyer , Andrew Chang , Aditya Devarakonda , Flavio Vella , Giulia Guidi

Evolving graphs arise in problems where interrelations between data change over time. We present a breadth first search (BFS) algorithm for evolving graphs that computes the most direct influences between nodes at two different times. Using…

Social and Information Networks · Computer Science 2016-03-07 Jiahao Chen , Weijian Zhang

Graph Convolutional Networks (GCNs) are extensively utilized for deep learning on graphs. The large data sizes of graphs and their vertex features make scalable training algorithms and distributed memory systems necessary. Since the…

Machine Learning · Computer Science 2022-12-14 Gunduz Vehbi Demirci , Aparajita Haldar , Hakan Ferhatosmanoglu

There are numerous NP-hard combinatorial problems which involve searching for an undirected graph satisfying a certain property. One way to solve such problems is to translate a problem into an instance of the boolean satisfiability (SAT)…

Data Structures and Algorithms · Computer Science 2018-04-09 Vyacheslav Moklev , Vladimir Ulyantsev

We study the problem of efficient generative inference for Transformer models, in one of its most challenging settings: large deep models, with tight latency targets and long sequence lengths. Better understanding of the engineering…

Recent studies have highlighted significant fairness issues in Graph Transformer (GT) models, particularly against subgroups defined by sensitive features. Additionally, GTs are computationally intensive and memory-demanding, limiting their…

Machine Learning · Computer Science 2025-01-03 Renqiang Luo , Huafei Huang , Ivan Lee , Chengpei Xu , Jianzhong Qi , Feng Xia

As the sizes of graphs grow rapidly, currently many real-world graphs can hardly be loaded in the main memory. It becomes a hot topic to compute depth-first search (DFS) results, i.e., depth-first order or DFS-Tree, on semi-external memory…

Databases · Computer Science 2022-02-23 Xiaolong Wan , Hongzhi Wang

High-performance implementations of graph algorithms are challenging to implement on new parallel hardware such as GPUs because of three challenges: (1) the difficulty of coming up with graph building blocks, (2) load imbalance on parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-16 Carl Yang , Aydin Buluc , John D. Owens

Rapid growth in scientific data and a widening gap between computational speed and I/O bandwidth makes it increasingly infeasible to store and share all data produced by scientific simulations. Instead, we need methods for reducing data…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-28 Jieyang Chen , Lipeng Wan , Xin Liang , Ben Whitney , Qing Liu , Qian Gong , David Pugmire , Nicholas Thompson , Jong Youl Choi , Matthew Wolf , Todd Munson , Ian Foster , Scott Klasky

Approximate nearest neighbor search (ANNS) in high-dimensional vector spaces has a wide range of real-world applications. Numerous methods have been proposed to handle ANNS efficiently, while graph-based indexes have gained prominence due…

Databases · Computer Science 2025-08-14 Zhonggen Li , Xiangyu Ke , Yifan Zhu , Bocheng Yu , Baihua Zheng , Yunjun Gao

We describe an approach to parallel graph partitioning that scales to hundreds of processors and produces a high solution quality. For example, for many instances from Walshaw's benchmark collection we improve the best known partitioning.…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-04-08 Manuel Holtgrewe , Peter Sanders , Christian Schulz

Approximate Nearest Neighbor Search (ANNS) underpins many large-scale data mining and machine learning applications, with efficient retrieval increasingly hinging on GPU acceleration as dataset sizes grow. Although graph-based approaches…

Databases · Computer Science 2026-02-20 Yaowen Liu , Xuejia Chen , Anxin Tian , Haoyang Li , Qinbin Li , Xin Zhang , Alexander Zhou , Chen Jason Zhang , Qing Li , Lei Chen

Modularity clustering is an essential tool to understand complicated graphs. However, existing methods are not applicable to massive graphs due to two serious weaknesses. (1) It is difficult to fully reproduce ground-truth clusters due to…

Social and Information Networks · Computer Science 2019-05-28 Hiroaki Shiokawa , Toshiyuki Amagasa , Hiroyuki Kitagawa

We present an algorithm for a fault tolerant Depth First Search (DFS) Tree in an undirected graph. This algorithm is drastically simpler than the current state-of-the-art algorithms for this problem, uses optimal space and optimal…

Data Structures and Algorithms · Computer Science 2019-03-28 Surender Baswana , Shiv Kumar Gupta , Ayush Tulsyan

Sampling technique has become one of the recent research focuses in the graph-related fields. Most of the existing graph sampling algorithms tend to sample the high degree or low degree nodes in the complex networks because of the…

Social and Information Networks · Computer Science 2018-02-02 Junpeng Zhu , Hui Li , Mei Chen , Zhenyu Dai , Ming Zhu

Graph-based ANNS algorithms have gained increasing research interest and market adoption due to their efficiency and accuracy in retrieval. Existing approaches primarily rely on CPUs for graph index construction and retrieval, but this…

Databases · Computer Science 2026-05-12 Lan Lu , Peiqi Yin , Isaac Yang , Tao Luo , Hua Fan , Wenchao Zhou , Feifei Li , Boon Thau Loo

Sorting and binary searching a dense array can be considered the simplest and most space efficient form of indexing. This holds especially on GPUs as they exhibit exceptional sorting performance. However, the popular opinion is that such a…

Databases · Computer Science 2026-02-24 Justus Henneberg , Felix Schuhknecht

Graph searching is one of the simplest and most widely used tools in graph algorithms. Every graph search method is defined using some particular selection rule, and the analysis of the corresponding vertex orderings can aid greatly in…

Discrete Mathematics · Computer Science 2021-09-07 Matjaž Krnc , Nevena Pivač

DBSCAN is a well-known density-based clustering algorithm to discover arbitrary shape clusters. While conceptually simple in serial, the algorithm is challenging to efficiently parallelize on manycore GPU architectures. Common pitfalls,…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-30 Andrey Prokopenko , Damien Lebrun-Grandie , Daniel Arndt

We provide the first approximation quality guarantees for the Cuthull-McKee heuristic for reordering symmetric matrices to have low bandwidth, and we provide an algorithm for reconstructing bounded-bandwidth graphs from distance oracles…

Data Structures and Algorithms · Computer Science 2025-07-10 David Eppstein , Michael T. Goodrich , Songyu Liu
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