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Colloidal particles of two types, driven in opposite directions, can segregate into lanes [Vissers et al. Soft Matter 7, 2352 (2011)]. This phenomenon can be reproduced by two-dimensional Brownian dynamics simulations of model particles…

Statistical Mechanics · Physics 2016-08-31 Katherine Klymko , Phillip L. Geissler , Stephen Whitelam

The biopolymers actin and microtubules are often in an ongoing assembling/disassembling state far from thermal equilibrium. Above a critical density this leads to spatially periodic patterns, as shown by a scaling argument and in terms of a…

Soft Condensed Matter · Physics 2007-05-23 Falko Ziebert , Walter Zimmermann

Protein phase transitions govern numerous diseases, including neurodegenerative disorders such as Parkinson's and Alzheimer's. In Parkinson's disease, distinct species of the protein alpha-synuclein undergo phase transitions from highly…

Soft Condensed Matter · Physics 2026-01-13 Holly Masson , Massimiliano Paesani , Ioana M. Ilie

Rhythmic and sequential segmentation of the embryonic body plan is a vital developmental patterning process in all vertebrate species. However, a theoretical framework capturing the emergence of dynamic patterns of gene expression from the…

Biological Physics · Physics 2016-10-12 David J. Jörg , Andrew C. Oates , Frank Jülicher

A formula of grain growth rate, based on a nonlinear capillarity-driven relation, is derived to predict and interpret realistic growth processes in polycrystalline systems. The derived formula reveals how the growth and stagnation of grains…

Materials Science · Physics 2017-12-12 Jianfeng Hu , Xianhao Wang

A new model that describes adsorption and clustering of particles on a surface is introduced. A {\it clustering} transition is found which separates between a phase of weakly correlated particle distributions and a phase of strongly…

Statistical Mechanics · Physics 2009-10-31 Ofer Biham , Ofer Malcai , Daniel A. Lidar , David Avnir

Dune fields are commonly associated with periodic patterns that are among the most recognizable landscapes on Earth and other planetary bodies. However, in zones of limited sediment supply, where periodic dunes elongate and align in the…

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

For two decades now, the importance of microstructure in the mechanical behaviour of a large collection of grains has been a topic of intense research. Many approaches have been developed to study the microstructure in granular materials,…

Soft Condensed Matter · Physics 2020-03-06 K. P. Krishnaraj

We discuss recent models of chemical evolution in the developing and collapsing protostellar envelopes associated with low-mass star formation. In particular, the effects of depletion of gas-phase molecules onto grain surfaces is…

Astrophysics · Physics 2007-05-23 Edwin A. Bergin

We present an experimental micro-model of drying porous media, based on microfluidic cells made of arrays of pillars on a regular grid, and complement these experiments with a matching two-dimensional pore-network model of drying. Disorder,…

Fluid Dynamics · Physics 2018-05-29 Paolo Fantinel , Oshri Borgman , Ran Holtzman , Lucas Goehring

Giant unilamellar vesicles (GUVs) composed of as few as three lipid species can phase separate into small-scale lipid domains with stripes and dots patterns. These patterns have been experimentally characterized in terms of how their size…

Soft Condensed Matter · Physics 2025-05-21 Qiwei Yu , Andrej Košmrlj

Successful biological development via spatial regulation of cell differentiation relies on action of multiple signaling molecules that are known as morphogens. It is now well established that signaling molecules create non-uniform…

Biological Physics · Physics 2015-06-23 Hamid Teimouri , Anatoly B. Kolomeisky

We study the translocation of a semiflexible polymer through extended pores with patterned stickiness, using Langevin dynamics simulations. We find that the consequence of pore patterning on the translocation time dynamics is dramatic and…

Soft Condensed Matter · Physics 2018-05-02 Rajneesh Kumar , Abhishek Chaudhuri , Rajeev Kapri

Recent findings suggest that shell protein distribution and morphology of bacterial microcompartments regulate the chemical fluxes facilitating reactions which dictate their biological function. We explore how the morphology and component…

Soft Condensed Matter · Physics 2023-07-25 Curt Waltmann , Ahis Shrestha , Monica Olvera de la Cruz

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

Soft Condensed Matter · Physics 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

Active stresses in biological cells and tissues drive many developmental processes. However, increasing experimental evidence suggests that additional mechanical interactions with surrounding material can play a crucial role in guiding…

Soft Condensed Matter · Physics 2026-03-10 Douglas MacMyn Brown , Alexander Mietke

Proteins control many vital functions in living cells, such as cell growth and cell division. Reliable coordination of these functions requires the spatial and temporal organizaton of proteins inside cells, which encodes information about…

Biological Physics · Physics 2022-02-22 Tom Burkart , Manon C. Wigbers , Laeschkir Würthner , Erwin Frey

In the beeswax combs of honey bees, the cells of brood, pollen, and honey have a consistent spatial pattern that is sustained throughout the life of a colony. This spatial pattern is believed to emerge from simple behavioral rules that…

Populations and Evolution · Quantitative Biology 2013-07-23 Kathryn J. Montovan , Nathaniel J. Karst , Laura E. Jones , Thomas D. Seeley

We study the phase behaviour of a fluid composed of particles which interact via a pair potential that is repulsive for large inter-particle distances, is attractive at intermediate distances and is strongly repulsive at short distances…

Soft Condensed Matter · Physics 2008-09-17 A. J. Archer , C. Ionescu , D. Pini , L. Reatto