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The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

Cell Behavior · Quantitative Biology 2024-12-24 Pedrom Zadeh , Brian A. Camley

It is known from both theory and experiments that introducing time delays into the communication network of mobile-agent swarms produces coherent rotational patterns. Often such spatio-temporal rotations can be bistable with other swarming…

Adaptation and Self-Organizing Systems · Physics 2020-04-15 Jason Hindes , Victoria Edwards , Sayomi Kamimoto , Ioana Triandaf , Ira B. Schwartz

We study the dynamics of belief formation on multiple interconnected topics in networks of agents with a shared belief system. We establish sufficient conditions and necessary conditions under which sustained oscillations of beliefs arise…

Optimization and Control · Mathematics 2023-03-24 Anastasia Bizyaeva , Alessio Franci , Naomi Ehrich Leonard

Collective sensing by interacting cells is observed in a variety of biological systems, and yet a quantitative understanding of how sensory information is collectively encoded is lacking. Here we investigate the ATP-induced calcium dynamics…

Cell Behavior · Quantitative Biology 2017-09-20 Garrett D Potter , Tommy A Byrd , Andrew Mugler , Bo Sun

In this paper we describe the solution of a stochastic bistable system from a dynamical perspective. We show how a single framework with variable noise can explain hysteresis at zero temperature and two-state coexistence in the presence of…

Statistical Mechanics · Physics 2019-11-25 Mahendra K. Verma , Abhishek Kumar , Adhip Pattanayak

The effect of stochasticity, in the form of Gaussian white noise, in a predator-prey model with two distinct time-scales is presented. A supercritical singular Hopf bifurcation yields a Type II excitability in the deterministic model. We…

Dynamical Systems · Mathematics 2017-07-20 Susmita Sadhu

I consider the problem of self-oscillatory systems undergoing a homogeneous Hopf bifurcation when they are submitted to an external forcing that is periodic in time, at a frequency close to the system's natural frequency (1:1 resonance),…

Pattern Formation and Solitons · Physics 2010-06-04 German J. de Valcarcel

The appearence of a new type of fast nonlinear traveling wave states in binary fluid convection with increasing Soret effect is elucidated and the parameter range of their bistability with the common slower ones is evaluated numerically.…

patt-sol · Physics 2009-10-30 St. Hollinger , P. Buechel , M. Luecke

Biofilms are ubiquitous macro-colonies of bacteria that develop at various interfaces (solid-liquid, solid-gas or liquid-gas). The formation of biofilms starts with the attachment of individual bacteria to an interface, where they…

Biological Physics · Physics 2016-11-03 Sarah Trinschek , Karin John , Uwe Thiele

We introduce an in silico model for the initial spread of an aberrant phenotype with Warburg-like overflow metabolism within a healthy homeostatic tissue in contact with a nutrient reservoir (the blood), aimed at characterizing the role of…

Molecular Networks · Quantitative Biology 2017-06-09 Jorge Fernandez-de-Cossio-Diaz , Andrea De Martino , Roberto Mulet

We report a novel morphological transition in a Bacillus subtilis colony initially growing under ambient conditions, after ultraviolet radiation exposure. The bacteria in the central regions of the colonies are observed to migrate towards…

Condensed Matter · Physics 2009-11-07 Anna M. Delprato , Azadeh Samadani , A. Kudrolli , L. S. Tsimring

Biological systems can rely on collective formation of a metachronal wave in an ensemble of oscillators for locomotion and for fluid transport. We consider one-dimensional chains of phase oscillators with nearest neighbor interactions,…

Biological Physics · Physics 2023-03-15 A. C. Quillen

Rippling patterns of myxobacteria appear in starving colonies before they aggregate to form fruiting bodies. These periodic traveling cell density waves arise from the coordination of individual cell reversals, resulting from an internal…

Statistical Mechanics · Physics 2016-01-26 L. L. Bonilla , A. Glavan , A. Marquina

Immotile microbes inhabit nearly every environment on Earth, from soils and sediments to food matrices -- yet how they disperse through these physically confining environments is poorly understood. Here, we show that immotile microbial…

Turbulence is ubiquitous, from oceanic currents to small-scale biological and quantum systems. Self-sustained turbulent motion in microbial suspensions presents an intriguing example of collective dynamical behavior amongst the simplest…

We analyze the asymptotic stability of a nonlinear system of two differential equations with delay describing the dynamics of blood cell production. This process takes place in the bone marrow where stem cells differentiate throughout…

Analysis of PDEs · Mathematics 2009-04-17 Fabien Crauste

We analyse the effect of intrinsic fluctuations on the properties of bistable stochastic systems with time scale separation operating under1 quasi-steady state conditions. We first formulate a stochastic generalisation of the quasi-steady…

Biological Physics · Physics 2016-03-02 Roberto de la Cruz , Pilar Guerrero , Fabian Spill , Tomás Alarcón

We outline a general theory for the analysis of flow-distributed standing and travelling wave patterns in one-dimensional, open plug-flows of oscillatory chemical media. We treat both the amplitude and phase dynamics of small and…

Pattern Formation and Solitons · Physics 2009-11-10 Patrick N. McGraw , Michael Menzinger

We consider a model proposed by one of the authors for a type of plastic instability found in creep experiments which reproduces a number of experimentally observed features. The model consists of three coupled non-linear differential…

Condensed Matter · Physics 2009-10-30 Mulugeta Bekele , G. Ananthakrishna

We construct a microscopic model to study discrete randomness in bistable systems coupled to an environment comprising many degrees of freedom. A quartic double well is bilinearly coupled to a finite number $N$ of harmonic oscillators.…

Statistical Mechanics · Physics 2020-10-19 Thomas Dittrich , Santiago Peña Martínez