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Cluster synchronization is a fundamental phenomenon in systems of coupled oscillators. Here, we investigate clustering patterns that emerge in a unidirectional ring of four delay-coupled electrochemical oscillators. A voltage parameter in…

Dynamical Systems · Mathematics 2023-06-28 Andrew Keane , Alannah Neff , Karen Blaha , Andreas Amann , Philipp Hövel

Collective cell migration lies at the intersection of developmental biology and non-equilibrium physics, where active processes give rise to emergent patterns that are biologically relevant. Here, we investigate dilatational modes--cycles…

Soft Condensed Matter · Physics 2025-07-23 Wenhui Tang , Mehrana R. Nejad , Adrian F. Pegoraro , L. Mahadevan , Ming Guo

Collective motion is a phenomenon observed across length scales in nature, from bacterial swarming and tissue migration to the flocking of animals. The mechanisms underlying this behavior vary significantly depending on the biological…

Soft Condensed Matter · Physics 2025-01-15 Urvi Mahendra Bora , Mohd Suhail Rizvi

To survive starvation, the bacterium Bacillus subtilis forms durable spores. The initial step of sporulation is asymmetric cell division, leading to a large mother-cell and a small forespore compartment. After division is completed and the…

Cell Behavior · Quantitative Biology 2015-06-23 Nikola Ojkic , Javier López-Garrido , Kit Pogliano , Robert G. Endres

We consider an ecological model consisting of two species of predators competing for their common prey with explicit interference competition. With a proper rescaling, the model is portrayed as a singularly perturbed system with one-fast…

Dynamical Systems · Mathematics 2022-09-23 Susmita Sadhu

Identifying early warning signs of sudden population changes and mechanisms leading to regime shifts are highly desirable in population biology. In this paper, a two-trophic ecosystem comprising of two species of predators, competing for…

Populations and Evolution · Quantitative Biology 2022-09-23 Susmita Sadhu

We present a novel form of collective oscillatory behavior in the kinetics of irreversible coagulation with a constant input of monomers and removal of large clusters. For a broad class of collision rates, this system reaches a…

Statistical Mechanics · Physics 2012-05-22 Robin C. Ball , Colm Connaughton , Peter P. Jones , R. Rajesh , Oleg Zaboronski

We study the onset of patterns in vertically oscillated layers of frictionless dissipative particles. Using both numerical solutions of continuum equations to Navier-Stokes order and molecular dynamics (MD) simulations, we find that…

Soft Condensed Matter · Physics 2011-11-10 J. Bougie , J. Kreft , J. B. Swift , Harry L. Swinney

Excitable media are systems which are at rest in the absence of external input but which respond to a sufficiently strong stimulus by sending a wave of "excitation" across the medium. Examples include cardiac and cortical tissue, and in…

Quantitative Methods · Quantitative Biology 2021-01-01 S. P. Hastings , M. M Sussman

We study here the spontaneous clustering of a submonolayer of grains under horizontal circular shaking. The clustering of grains occurs when increasing the oscillation amplitude beyond a threshold. The dense area travels in a circular…

Soft Condensed Matter · Physics 2021-08-06 Song-Chuan Zhao , Thorsten Pöschel

This paper is concerned with the robustness of the sustained oscillations predicted by an epidemic ODE model defined on contact networks. The model incorporates the spread of awareness among individuals and, moreover, a small inflow of…

Populations and Evolution · Quantitative Biology 2020-11-11 David Juher , David Rojas , Joan Saldaña

Signal propagation over long distances is a ubiquitous feature of multicellular communities. In biofilms of the bacterium Bacillus subtilis, we recently discovered that some, but not all, cells participate in the propagation of an…

Biological Physics · Physics 2020-07-01 Xiaoling Zhai , Joseph W. Larkin , Kaito Kikuchi , Samuel E. Redford , Gürol M. Süel , Andrew Mugler

The rate of metastable decay in nonequilibrium systems is expected to display scaling behavior: i.e., the logarithm of the decay rate should scale as a power of the distance to a bifurcation point where the metastable state disappears.…

Statistical Mechanics · Physics 2009-09-29 Oleg Kogan

We analyze the nonlinear dynamics near the incoherent state in a mean-field model of coupled oscillators. The population is described by a Fokker-Planck equation for the distribution of phases, and we apply center-manifold reduction to…

patt-sol · Physics 2009-10-22 John David Crawford

Bacterial biofilms collectively develop distinct and ordered structures, including fibers, bundles, and branches. Often, it is unclear how these structural motifs convey specific advantages to bacterial strains under challenging conditions.…

Soft Condensed Matter · Physics 2022-11-16 Mustafa Basaran , Tevfik Can Yüce , Yusuf Ilker Yaman , Roman Vetter , Askin Kocabas

A diffusion-reaction model for the growth of bacterial colonies is presented. The often observed cooperative behavior developed by bacteria which increases their motility in adverse growth conditions is here introduced as a nonlinear…

Condensed Matter · Physics 2009-10-31 A. M. Lacasta , I. R. Cantalapiedra , C. E. Auguet , A. Penaranda , L. Ramirez-Piscina

We study the emergence of periodic oscillations through a Hopf bifurcation in a scalar diffusion equation on the half line coupled to a dynamic boundary condition. Our results quantify the effect of delay through the buffering in the…

Analysis of PDEs · Mathematics 2026-04-02 Merlin Pelz , Arnd Scheel

Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

Soft Condensed Matter · Physics 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

We develop a model of bistable oscillator with nonlinear dissipation. Using a numerical simulation and an electronic circuit realization of this system we study its response to additive noise excitations. We show that depending on noise…

Adaptation and Self-Organizing Systems · Physics 2016-05-25 Vladimir V. Semenov , Alexander B. Neiman , Tatyana E. Vadivasova , Vadim S. Anishchenko

Cellular differentiation in a developping organism is studied via a discrete bistable reaction-diffusion model. A system of undifferentiated cells is allowed to receive an inductive signal emenating from its environment. Depending on the…

Pattern Formation and Solitons · Physics 2009-11-10 Gabor Fath , Zbigniew Domanski