English
Related papers

Related papers: Genomics as a Service: a Joint Computing and Netwo…

200 papers

Background: Bayesian Networks (BNs) are probabilistic graphical models that leverage Bayes' theorem to portray dependencies and cause-and-effect relationships between variables. These networks have gained prominence in the field of health…

Summary: The vast generation of genetic data poses a significant challenge in efficiently uncovering valuable knowledge. Introducing GENEVIC, an AI-driven chat framework that tackles this challenge by bridging the gap between genetic data…

Quantitative Methods · Quantitative Biology 2024-04-09 Anindita Nath , Savannah Mwesigwa , Yulin Dai , Xiaoqian Jiang , Zhongming Zhao

Choosing the most adequate kernel is crucial in many Machine Learning applications. Gaussian Process is a state-of-the-art technique for regression and classification that heavily relies on a kernel function. However, in the Gaussian…

Machine Learning · Computer Science 2019-10-15 Ibai Roman , Roberto Santana , Alexander Mendiburu , Jose A. Lozano

During genomics life science research, the data volume of whole genomics and life science algorithm is going bigger and bigger, which is calculated as TB, PB or EB etc. The key problem will be how to store and analyze the data with…

Databases · Computer Science 2017-02-01 Hao Li

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

Machine Learning · Computer Science 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

Computing needs for high energy physics are already intensive and are expected to increase drastically in the coming years. In this context, heterogeneous computing, specifically as-a-service computing, has the potential for significant…

Infrastructure as a Service (IaaS) clouds have become the predominant underlying infrastructure for the operation of modern and smart technology. IaaS clouds have proven to be useful for multiple reasons such as reduced costs, increased…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-13 Nivedhitha Duggi , Masoud Rafiei , Mohsen Amini Salehi

This paper explores the use of genetic algorithms for the design of networks, where the demands on the network fluctuate in time. For varying network constraints, we find the best network using the standard genetic algorithm operators such…

Neural and Evolutionary Computing · Computer Science 2009-11-10 Matthew J. Berryman , Andrew Allison , Derek Abbott

In-network computation represents a transformative approach to addressing the escalating demands of Artificial Intelligence (AI) workloads on network infrastructure. By leveraging the processing capabilities of network devices such as…

Networking and Internet Architecture · Computer Science 2025-08-19 Aleksandr Algazinov , Joydeep Chandra , Matt Laing

This paper addresses the path selection problem from a known sender to the receiver. The proposed work shows path selection using genetic algorithm(GA)and simulated annealing (SA) approaches. In genetic algorithm approach, the multi point…

Neural and Evolutionary Computing · Computer Science 2016-09-08 T. R. Gopalakrishnan Nair , Kavitha Sooda

Genome-wide association studies (GWAS) have identified hundreds of loci at very stringent levels of statistical significance across many different human traits. However, it is now clear that very large samples (n~10^4-10^5) are needed to…

Genomics · Quantitative Biology 2013-08-20 Inti Pedroso

This study presents a novel approach at the intersection of genomic analysis and artificial intelligence (AI) to predict viral mutations and assess the risks of future pandemics. Through comprehensive genomic analysis, genetic markers…

Other Quantitative Biology · Quantitative Biology 2023-09-29 Fadhil G. Al-Amran , Abbas M. Hezam , Salman Rawaf , Maitham G. Yousif

Geo-distributed computing, a paradigm that assigns computational tasks to globally distributed nodes, has emerged as a promising approach in cloud computing, edge computing, cloud-edge computing and supercomputer computing (HPC). It enables…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-28 Yujian Wu , Shanjiang Tang , Ce Yu , Bin Yang , Chao Sun , Jian Xiao , Hutong Wu

Translating the vast data generated by genomic platforms into reliable predictions of clinical outcomes remains a critical challenge in realizing the promise of genomic medicine largely due to small number of independent samples. In this…

Quantitative Methods · Quantitative Biology 2019-04-04 Safoora Yousefi , Amirreza Shaban , Mohamed Amgad , Ramraj Chandradevan , Lee A. D. Cooper

Motivation: Networks underlie the generation and interpretation of many biological datasets: gene networks shed light on the regulatory structure of the genome, and cell networks can capture structure of the tumor micro-environment.…

Machine Learning · Statistics 2026-03-18 Bailey Andrew , Erica L. Harris , James A. Poulter , David R. Westhead , Luisa Cutillo

The Global Alliance for Genomics and Health (GA4GH) Task Execution Service (TES) API is a standardized schema and API for describing and executing batch execution tasks. It provides a common way to submit and manage tasks to a variety of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-02 Alexander Kanitz , Matthew H. McLoughlin , Liam Beckman , Venkat S. Malladi , Kyle P. Ellrott

Nowadays genetic algorithm (GA) is greatly used in engineering pedagogy as an adaptive technique to learn and solve complex problems and issues. It is a meta-heuristic approach that is used to solve hybrid computation challenges. GA…

Other Computer Science · Computer Science 2020-07-27 Tanweer Alam , Shamimul Qamar , Amit Dixit , Mohamed Benaida

Network inference is a rapidly advancing field, with new methods being proposed on a regular basis. Understanding the advantages and limitations of different network inference methods is key to their effective application in different…

Molecular Networks · Quantitative Biology 2016-09-15 Narsis A. Kiani , Hector Zenil , Jakub Olczak , Jesper Tegnér

Genetic Algorithms (GAs) are known for their efficiency in solving combinatorial optimization problems, thanks to their ability to explore diverse solution spaces, handle various representations, exploit parallelism, preserve good…

Neural and Evolutionary Computing · Computer Science 2023-09-29 Majid Sohrabi , Amir M. Fathollahi-Fard , Vasilii A. Gromov

As future tasks in networked systems are increasingly relying on collaborative execution among distributed devices, trust has become an essential tool for securing both reliable collaborators and task-specific resources. However, the…

Systems and Control · Electrical Eng. & Systems 2026-04-09 Botao Zhu , Xianbin Wang