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DNA regulation and repair processes require direct interactions between proteins and DNA at specific sites. Local fluctuations of the sugar-phosphate backbones and bases of DNA (a form of DNA "breathing") play a central role in such…

The electronic structure and electron-phonon coupling in Y2C3 is investigated using density functional calculations. We find that the Fermi level falls in a manifold of mixed character derived from Y d states and antibonding states…

Superconductivity · Physics 2009-11-10 D. J. Singh , I. I. Mazin

We investigate the electron (hole) transport through short double-stranded DNA wires in which the electrons are strongly coupled to the specific vibrational modes (vibrons) of the DNA. We analyze the problem starting from a tight-binding…

Mesoscale and Nanoscale Physics · Physics 2015-06-25 Benjamin B. Schmidt , Matthias H. Hettler , Gerd Schön

Circular double stranded DNA has different topological states which are defined by their linking numbers. Equilibrium distribution of linking numbers can be obtained by closing a linear DNA into a circle by ligase. Using Monte Carlo…

Biomolecules · Quantitative Biology 2009-05-04 Hu Chen , Yanhui Liu , Zhen Zhou , Lin Hu , Zhong-Can Ou-Yang , Jie Yan

DNA has a well-defined structural transition -- the denaturation of its double-stranded form into two single strands -- that strongly affects its thermal transport properties. We show that, according to a widely implemented model for DNA…

Soft Condensed Matter · Physics 2013-02-12 Chih-Chun Chien , Kirill A. Velizhanin , Yonatan Dubi , Michael Zwolak

Macroscopic spontaneous coherence of exciton-polariton in semiconductor cavity is one important research field in condensed matter physics. All-inorganic micro/nanowire Fabry-P\'erot cavity with excellent optical performance makes it…

Mesoscale and Nanoscale Physics · Physics 2017-11-16 Wenna Du , Shuai Zhang , Jia Shi , Jie Chen , Zhiyong Wu , Yang Mi , Zhixiong Liu , Yuanzheng Li , Xinyu Sui , Tom Wu , Yunfeng Xiao , Qing Zhang , Xinfeng Liu

Transfer and decay dynamics of an exciton coupled to a polarization vibration in a dimer is investigated in a mixed quantum-classical picture with the exciton decay incorporated by a sink site. Using a separation of time scales, it is…

Condensed Matter · Physics 2009-10-28 Holger Schanz , Ivan Barvik , Bernd Esser

Recent synthetic progress has enabled the controlled fusion of colloidal CdSe/CdS quantum dots in order to form dimers manifesting electronic coupling in their optical response. While this ``artificial H2 molecule'' constitutes a milestone…

Mesoscale and Nanoscale Physics · Physics 2024-11-27 Jordi Llusar , Juan I. Climente

Exciton-phonon interactions govern the optical response of semiconductors, yet disentangling multiple coupling channels in lead halide perovskites remains challenging. We investigate CsPbBr3 microcrystals using photoluminescence, Raman and…

Mesoscale and Nanoscale Physics · Physics 2026-02-19 Pradeepa H. L. , Sagnik Chatterjee , Sayantan Patra , Swapneswar Bisoi , Saqlain Mushtaq , Hardeep , Akshay Singh , Ashish Arora , Atikur Rahman

In this paper we consider the essential electronic excited states in parallel chains of semiconducting polymers that are currently being explored for photovoltaic and light-emitting diode applications. In particular, we focus upon various…

Materials Science · Physics 2009-11-11 Eric R. Bittner , John Glenn Santos Ramon , Stoyan Karabunarliev

We theoretically demonstrate the formation of multiple bi-stability regions in the temperature pattern on the interface between a cuprous oxide quantum well and DCM2:CA:PS organic compound. The Frenkel molecular exciton of the DCM2 is…

Materials Science · Physics 2009-11-13 Oleksiy Roslyak , Joseph L. Birman

We present a theoretical analysis of exciton transfer and decoherence effects in a photosynthetic dimer interacting with collective (correlated) and local (uncorrelated) protein-solvent environments. Our approach is based on the framework…

Quantum Physics · Physics 2015-12-31 M. Merkli , G. P. Berman , R. T. Sayre , S. Gnanakaran , M. Könenberg , A. I. Nesterov , H. Song

Photosynthesis relies on a network of chlorophyll-like molecules which together lead to efficient long-range energy funneling. Evidence at cryogenic temperatures suggests that mechanistic details of energy/charge transfer must invoke…

Chemical Physics · Physics 2025-07-16 Asha S. Thomas , Camelia Roy , Vivek N. Bhat , Indranil Roy , Vivek Tiwari

Thermal denaturation of DNA is often studied with coarse-grained models in which native sequential base pairing is mimicked by the existence of attractive interactions only between monomers at the same position along strands (Poland and…

Statistical Mechanics · Physics 2014-01-22 Jaya Maji , Somendra M. Bhattacharjee , Flavio Seno , Antonio Trovato

Exciton problem is solved in the two-dimensional Dirac model with allowance for strong electron-hole attraction. The exciton binding energy is assumed smaller than but comparable to the band gap. The exciton wavefunction is found in the…

Mesoscale and Nanoscale Physics · Physics 2020-10-28 N. V. Leppenen , L. E. Golub , E. L. Ivchenko

Photo-induced dynamics of electronic processes in materials are driven by the coupling between electronic and nuclear degrees of freedom. Here we construct 1D and 2D organic-inorganic tin halides to investigate the functional role of…

Inter- or intramolecular coupling processes between chromophores such as excimer formation or H- and J-aggregation are crucial to describing the photophysics of closely packed films of conjugated polymers. Such coupling is highly distance…

We study a mechanism to induce superconductivity in atomically thin semiconductors where excitons mediate an effective attraction between electrons. Our model includes interaction effects beyond the paradigm of phonon-mediated…

Mesoscale and Nanoscale Physics · Physics 2024-11-28 Jonas von Milczewski , Xin Chen , Atac Imamoglu , Richard Schmidt

F\"orster theory describes electronic exciton energy migration in molecular assemblies as an incoherent hopping process between donor and acceptor molecules. The rate is expressed in terms of the overlap integral between donor fluorescence…

Chemical Physics · Physics 2018-10-17 Marco Schröter , Tõnu Pullerits , Oliver Kühn

Rydberg excitons in two-dimensional semiconductors provide sensitive and non-destructive probes of physics in proximal sample layers that host correlated electronic states. In particular, electron or hole doping of the sample layer is…

Mesoscale and Nanoscale Physics · Physics 2025-12-09 Arthur Christianen , Anna M. Seiler , Alperen Tüğen , Ataç İmamoğlu
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