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The displayed tree phylogenetic network model is shown to sit as a natural submodel of the graphical model associated to a directed acyclic graph (DAG). This representation allows to derive a number of results about the displayed tree…

Populations and Evolution · Quantitative Biology 2025-08-01 Seth Sullivant

Testing the validity of probabilistic models containing unmeasured (hidden) variables is shown to be a hard task. We show that the task of testing whether models are structurally incompatible with the data at hand, requires an exponential…

Artificial Intelligence · Computer Science 2013-02-28 Dan Geiger , Azaria Paz , Judea Pearl

Let $S_{p,n}$ denote the sample covariance matrix based on $n$ independent identically distributed $p$-dimensional random vectors in the null-case. The main result of this paper is an explicit expansion of trace moments and power-trace…

Statistics Theory · Mathematics 2023-09-15 Ben Deitmar

We consider a probability distribution on the set of Boolean functions in n variables which is induced by random Boolean expressions. Such an expression is a random rooted plane tree where the internal vertices are labelled with connectives…

Combinatorics · Mathematics 2015-09-28 Antoine Genitrini , Bernhard Gittenberger , Veronika Kraus , Cécile Mailler

A model named `Colored Percolation' has been introduced with its infinite number of versions in two dimensions. The sites of a regular lattice are randomly occupied with probability $p$ and are then colored by one of the $n$ distinct colors…

Statistical Mechanics · Physics 2017-09-13 Sumanta Kundu , S. S. Manna

We consider situations where data have been collected such that the sampling depends on the outcome of interest and possibly further covariates, as for instance in case-control studies. Graphical models represent assumptions about the…

Methodology · Statistics 2011-01-06 Vanessa Didelez , Svend Kreiner , Niels Keiding

Much of the power of probabilistic methods in modelling language comes from their ability to compare several derivations for the same string in the language. An important starting point for the study of such cross-derivational properties is…

Computation and Language · Computer Science 2007-05-23 Anoop Sarkar

Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…

Combinatorics · Mathematics 2015-06-24 Art M. Duval , Caroline J. Klivans , Jeremy L. Martin

In this paper, we study unique colourings in random graphs as a generalization of both conflict-free and injective colourings. Specifically, we impose the condition that a fraction of vertices in the neighbourhood of any vertex are assigned…

Combinatorics · Mathematics 2023-11-21 Ghurumuruhan Ganesan

Based on decision trees, many fields have arguably made tremendous progress in recent years. In simple words, decision trees use the strategy of "divide-and-conquer" to divide the complex problem on the dependency between input features and…

Machine Learning · Computer Science 2021-01-22 Jinxiong Zhang

Diversification models describe the random growth of evolutionary trees, modeling the historical relationships of species through speciation and extinction events. One class of such models allows for independently changing traits, or types,…

Statistics Theory · Mathematics 2022-06-22 Dakota Dragomir , Elizabeth S. Allman , John A. Rhodes

Causal Models are like Dependency Graphs and Belief Nets in that they provide a structure and a set of assumptions from which a joint distribution can, in principle, be computed. Unlike Dependency Graphs, Causal Models are models of…

Artificial Intelligence · Computer Science 2013-03-08 John F. Lemmer

This paper considers the problem of invoking auxiliary, unobservable variables to facilitate the structuring of causal tree models for a given set of continuous variables. Paralleling the treatment of bi-valued variables in [Pearl 1986], we…

Artificial Intelligence · Computer Science 2013-04-11 Lei Xu , Judea Pearl

We investigate the joint distribution of the vertex degrees in three models of random bipartite graphs. Namely, we can choose each edge with a specified probability, choose a specified number of edges, or specify the vertex degrees in one…

Combinatorics · Mathematics 2022-12-22 Brendan D. McKay , Fiona Skerman

By weighted tree we understand such connected tree,that: a) each its vertex and each edge have a positive integer weight; b) the weight of each vertex is equal to the sum of weights of outgoing edges. Each tree has a binary structure --- we…

Combinatorics · Mathematics 2013-10-24 Yury Kochetkov

Tree ensembles, such as random forests and boosted trees, are renowned for their high prediction performance. However, their interpretability is critically limited due to the enormous complexity. In this study, we present a method to make a…

Machine Learning · Statistics 2017-03-01 Satoshi Hara , Kohei Hayashi

The paper introduces a generalization for known probabilistic models such as log-linear and graphical models, called here multiplicative models. These models, that express probabilities via product of parameters are shown to capture…

Artificial Intelligence · Computer Science 2012-06-18 Ydo Wexler , Christopher Meek

Tree-based machine learning models such as random forests, decision trees, and gradient boosted trees are the most popular non-linear predictive models used in practice today, yet comparatively little attention has been paid to explaining…

We introduce a novel class of graphical models, termed profile graphical models, that represent, within a single graph, how an external factor influences the dependence structure of a multivariate set of variables. This class is quite…

Methodology · Statistics 2026-03-31 Alejandra Avalos-Pacheco , Monia Lupparelli , Francesco C. Stingo

Joint distributions over many variables are frequently modeled by decomposing them into products of simpler, lower-dimensional conditional distributions, such as in sparsely connected Bayesian networks. However, automatically learning such…

Machine Learning · Computer Science 2013-01-07 Scott Davies , Andrew Moore