Related papers: Inducibility of d-ary trees

Given a gene tree and a species tree, ancestral configurations represent the combinatorially distinct sets of gene lineages that can reach a given node of the species tree. They have been introduced as a data structure for use in the…

The largest common embeddable subtree problem asks for the largest possible tree embeddable into two input trees and generalizes the classical maximum common subtree problem. Several variants of the problem in labeled and unlabeled rooted…

Estimating a joint Highest Posterior Density credible set for a multivariate posterior density is challenging as dimension gets larger. Credible intervals for univariate marginals are usually presented for ease of computation and…

An $r$-matching in a graph $G$ is a collection of edges in $G$ such that the distance between any two edges is at least $r$. A $2$-matching is also called an induced matching. In this paper, we estimate the maximum number of $r$-matchings…

The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…

We prove that for any finite tree $T$ with $n$ vertices and maximal degree $3$, there is a topological embedding of $T$ into the integer grid $Z^2$ which maps vertices to vertices and whose image meets at most $\frac{7}{3}n$ vertices. This…

We consider a continuous time random walk on the rooted binary tree of depth $n$ with all transition rates equal to one and study its cover time, namely the time until all vertices of the tree have been visited. We prove that, normalized by…

In a recent paper on 'Estimating Species Trees from Unrooted Gene Trees' Liu and Yu observe that the distance matrix on the underlying taxon set, which is built up from expected internode distances on gene trees under the multispecies…

We study randomly growing trees governed by the affine preferential attachment rule. Starting with a seed tree $S$, vertices are attached one by one, each linked by an edge to a random vertex of the current tree, chosen with a probability…

A difference vertex labeling of a graph G is an assignment f of labels to the vertices of G that induces for each edge xy the weight |f(x)-f(y)|. A difference vertex labeling f of a graph G of size n is odd-graceful if f is an injection…

The Gyarfas-Sumner conjecture asserts that if H is a tree then every graph with bounded clique number and very large chromatic number contains H as an induced subgraph. This is still open, although it has been proved for a few simple…

Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for bicombining tree-child networks in which…

An induced forest of a graph G is an acyclic induced subgraph of G. The present paper is devoted to the analysis of a simple randomised algorithm that grows an induced forest in a regular graph. The expected size of the forest it outputs…

We show that every n-point tree metric admits a (1+eps)-embedding into a C(eps) log n-dimensional L_1 space, for every eps > 0, where C(eps) = O((1/eps)^4 log(1/eps)). This matches the natural volume lower bound up to a factor depending…

The space requirements of an $m$-ary search tree satisfies a well-known phase transition: when $m\leq 26$, the second order asymptotics is Gaussian. When $m\geq 27$, it is not Gaussian any longer and a limit $W$ of a complex-valued…

The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…

Codes over trees were introduced recently to bridge graph theory and coding theory with diverse applications in computer science and beyond. A central challenge lies in determining the maximum number of labelled trees over $n$ nodes with…

Merge trees are a topological descriptor of a filtered space that enriches the degree zero barcode with its merge structure. The space of merge trees comes equipped with an interleaving distance $d_I$, which prompts a naive question: is the…

Graph isomorphism, subgraph isomorphism, and maximum common subgraphs are classical well-investigated objects. Their (parameterized) complexity and efficiently tractable cases have been studied. In the present paper, for a given set of…

Between the leaves and the nodes of a complete binary tree, a separate parent-child-sister hierarchy is employed independent of the parent-child-sister hierarchy used for the rest of the tree. Two different versions of such a local…