Related papers: An Efficient Generalized Shift-Rule for the Prefer…
A shift rule for the prefer-max De Bruijn sequence is formulated, for all sequence orders, and over any finite alphabet. An efficient algorithm for this shift rule is presented, which has linear (in the sequence order) time and memory…
We present a combinatorial game and propose efficiently computable optimal strategies. We then show how these strategies can be translated to efficiently computable shift-rules for the well known prefer-max and prefer-min De Bruijn…
A cut-down de Bruijn sequence is a cyclic string of length $L$, where $1 \leq L \leq k^n$, such that every substring of length $n$ appears at most once. Etzion [Theor. Comp. Sci 44 (1986)] gives an algorithm to construct binary cut-down de…
The greedy Prefer-same de Bruijn sequence construction was first presented by Eldert et al.[AIEE Transactions 77 (1958)]. As a greedy algorithm, it has one major downside: it requires an exponential amount of space to store the length $2^n$…
A de Bruijn sequence of order n over a k-symbol alphabet is a circular sequence where each length-n sequence occurs exactly once. We present a way of extending de Bruijn sequences by adding a new symbol to the alphabet: the extension is…
A (non-circular) de Bruijn sequence w of order n is a word such that every word of length n appears exactly once in w as a factor. In this paper, we generalize the concept to a multi-shift setting: a multi-shift de Bruijn sequence tau(m,n)…
We propose a novel construction for the well-known prefer-max De Bruijn sequence, based on the cycle joining technique. We further show that the construction implies known results from the literature in a straightforward manner. First, it…
We put forward new general criteria to design successor rules that generate binary de Bruijn sequences. Prior fast algorithms based on successor rules in the literature are then shown to be special instances. We implemented the criteria to…
For positive integers $k,n$, a de Bruijn sequence $B(k,n)$ is a finite sequence of elements drawn from $k$ characters whose subwords of length $n$ are exactly the $k^n$ words of length $n$ on $k$ characters. This paper introduces the…
The de Bruijn graph, its sequences, and their various generalizations, have found many applications in information theory, including many new ones in the last decade. In this paper, motivated by a coding problem for emerging memory…
Binary time series data are very common in many applications, and are typically modelled independently via a Bernoulli process with a single probability of success. However, the probability of a success can be dependent on the outcome…
Orientable sequences of order n are infinite periodic sequences with symbols drawn from a finite alphabet of size k with the property that any particular subsequence of length n occurs at most once in a period in either direction. They were…
We investigate binary sequences generated by non-Markovian rules with memory length $\mu$, similar to those adopted in Elementary Cellular Automata. This generation procedure is equivalente to a shift register and certain rules produce…
We study a fixed-window counting system in which integers are represented by words of constant length while the alphabet grows as needed. This viewpoint arises from De Bruijn sequences: for fixed order $n$, the reverse prefer-max sequence…
A universal cycle for a set S of combinatorial objects is a cyclic sequence of length |S|that contains a representation of each element in S exactly once as a substring. If S is the set of k-subsets of [n] = {1, 2, . . . , n}, it is…
We study how to generate binary de Bruijn sequences efficiently from the class of simple linear feedback shift registers with feedback function $f(x_0, x_1, \ldots, x_{n-1}) = x_0 + x_1 + x_{n-1}$ for $n \geq 3$, using the cycle joining…
The well known prefer-one, prefer-opposite, and prefer-same binary de Bruijn sequences are all constructed using simple preference rules. We apply the technique of preference functions of span one to define q-ary sequences that generalize…
The de Bruijn graph $G_K$ of a set of strings $S$ is a key data structure in genome assembly that represents overlaps between all the $K$-length substrings of $S$. Construction and navigation of the graph is a space and time bottleneck in…
A graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy\in E$. For integers $n>k>0 $, the shift graph $G(n,k)$ is the graph whose vertex set…
For a set of integers $I$, we define a $q$-ary $I$-cycle to be a assignment of the symbols 1 through $q$ to the integers modulo $q^n$ so that every word appears on some translate of $I$. This definition generalizes that of de Bruijn cycles,…