Related papers: Biomedical Question Answering via Weighted Neural …
Large language models (LLMs) have recently become the leading source of answers for users' questions online. Despite their ability to offer eloquent answers, their accuracy and reliability can pose a significant challenge. This is…
Keyword-based searches are today's standard in digital libraries. Yet, complex retrieval scenarios like in scientific knowledge bases, need more sophisticated access paths. Although each document somewhat contributes to a domain's body of…
Traditional information retrieval systems rely on keywords to index documents and queries. In such systems, documents are retrieved based on the number of shared keywords with the query. This lexical-focused retrieval leads to inaccurate…
The scientific literature is growing faster than ever. Finding an expert in a particular scientific domain has never been as hard as today because of the increasing amount of publications and because of the ever growing diversity of…
Bias in datasets can be very detrimental for appropriate statistical estimation. In response to this problem, importance weighting methods have been developed to match any biased distribution to its corresponding target unbiased…
Machine comprehension question answering, which finds an answer to the question given a passage, involves high-level reasoning processes of understanding and tracking the relevant contents across various semantic units such as words,…
In open-domain question answering, dense passage retrieval has become a new paradigm to retrieve relevant passages for finding answers. Typically, the dual-encoder architecture is adopted to learn dense representations of questions and…
One of the challenges in large-scale information retrieval (IR) is to develop fine-grained and domain-specific methods to answer natural language questions. Despite the availability of numerous sources and datasets for answer retrieval,…
This paper develops a model that addresses sentence embedding, a hot topic in current natural language processing research, using recurrent neural networks with Long Short-Term Memory (LSTM) cells. Due to its ability to capture long term…
We describe an investigation of the use of probabilistic models and cost-benefit analyses to guide resource-intensive procedures used by a Web-based question answering system. We first provide an overview of research on question-answering…
Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…
In this paper, we present our system for the BioNNE English track, which aims to extract 8 types of biomedical nested named entities from biomedical text. We use a large language model (Mixtral 8x7B instruct) and ScispaCy NER model to…
The interaction of conversational systems with users poses an exciting opportunity for improving them after deployment, but little evidence has been provided of its feasibility. In most applications, users are not able to provide the…
We present a novel neural architecture for answering queries, designed to optimally leverage explicit support in the form of query-answer memories. Our model is able to refine and update a given query while separately accumulating evidence…
We present a system for answering questions based on the full text of books (BookQA), which first selects book passages given a question at hand, and then uses a memory network to reason and predict an answer. To improve generalization, we…
Answer retrieval is to find the most aligned answer from a large set of candidates given a question. Learning vector representations of questions/answers is the key factor. Question-answer alignment and question/answer semantics are two…
Extracting biomedical relations from large corpora of scientific documents is a challenging natural language processing task. Existing approaches usually focus on identifying a relation either in a single sentence (mention-level) or across…
Recent advances in large language models (LLMs) and biomedical foundation models (BioFMs) have achieved strong results in biological text reasoning, molecular modeling, and single-cell analysis, yet they remain siloed in disjoint embedding…
Word embeddings have found their way into a wide range of natural language processing tasks including those in the biomedical domain. While these vector representations successfully capture semantic and syntactic word relations, hidden…
This paper aims at improving how machines can answer questions directly from text, with the focus of having models that can answer correctly multiple types of questions and from various types of texts, documents or even from large…