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Heterogeneous distribution of passive and active domains in the chromosome plays a crucial role for its dynamic organization within the cell nucleus. Motivated by that here we investigate the steady-state conformation and dynamics of a…

Soft Condensed Matter · Physics 2024-09-27 Suman Majumder , Subhajit Paul

The coupled dynamics of entangled polymers which span a broad time and length scales govern the unique viscoelastic properties of polymers. To follow chain mobility by numerical simulations from the intermediate Rouse and reptation regimes…

Soft Condensed Matter · Physics 2016-11-03 Gary S. Grest

The coil-globule transition of an isolated polymer has been well established to be a second-order phase transition described by a standard tricritical O(0) field theory. We present Monte-Carlo simulations of interacting self-avoiding walks…

Statistical Mechanics · Physics 2009-11-07 Thomas Prellberg , Aleksander L. Owczarek

Self-avoiding walks self-interacting via nearest neighbours (ISAW) and self-avoiding trails interacting via multiply-visited sites (ISAT) are two models of the polymer collapse transition of a polymer in dilute solution. On the square…

Statistical Mechanics · Physics 2013-02-01 A Bedini , A L Owczarek , T Prellberg

We derive sub-Gaussian bounds for the annealed transition density of the simple random walk on a high-dimensional loop-erased random walk. The walk dimension that appears in these is the exponent governing the space-time scaling of the…

Probability · Mathematics 2023-12-18 David A. Croydon , Daisuke Shiraishi , Satomi Watanabe

It has been recently argued that interacting self-avoiding walks (ISAW) of length $ \ell , $ in their low temperature phase (i.e. below the $ \Theta $-point) should have a partition function of the form: $$ Q_{\ell} \sim \mu^{ \ell}_ 0\mu^{…

Condensed Matter · Physics 2009-10-22 Bertrand Duplantier

The nearest neighbor contacts between the two halves of an N-site lattice self-avoiding walk offer an unusual example of scaling random geometry: for N going to infinity they are strictly finite in number but their radius of gyration Rc is…

Statistical Mechanics · Physics 2007-05-23 Marco Baiesi , Enzo Orlandini , Attilio L. Stella

Wavefunction collapse models modify Schr\"odinger's equation so that it describes the collapse of a superposition of macroscopically distinguishable states as a dynamical process. This provides a basis for the resolution of the quantum…

Quantum Physics · Physics 2014-11-26 Daniel Bedingham , Hendrik Ulbricht

We study the dynamics of the passage of a polymer through a membrane pore (translocation), focusing on the scaling properties with the number of monomers $N$. The natural coordinate for translocation is the number of monomers on one side of…

Soft Condensed Matter · Physics 2009-11-07 Jeffrey Chuang , Yacov Kantor , Mehran Kardar

We consider the critical behaviour of the continuous-time weakly self-avoiding walk with contact self-attraction on $\mathbb{Z}^4$, for sufficiently small attraction. We prove that the susceptibility and correlation length of order $p$ (for…

Mathematical Physics · Physics 2020-04-28 Roland Bauerschmidt , Gordon Slade , Benjamin C. Wallace

Long linear polymers in dilute solutions are known to undergo a collapse transition from a random coil (expand itself) to a compact ball (fold itself up) when the temperature is lowered, or the solvent quality deteriorates. A natural model…

Probability · Mathematics 2015-06-12 Gia Bao Nguyen , Nicolas Petrelis

We present event distributions for the polymer translocation obtained by extensive Langevin dynamics simulations. Such distributions have not been reported previously and they provide new understanding of the stochastic characteristics of…

Soft Condensed Matter · Physics 2012-04-13 R. P. Linna , K. Kaski

We study self-avoiding walks on three-dimensional critical percolation clusters using a new exact enumeration method. It overcomes the exponential increase in computation time by exploiting the clusters' fractal nature. We enumerate walks…

Statistical Mechanics · Physics 2015-06-22 Niklas Fricke , Wolfhard Janke

The density crossover scaling of various thermodynamic properties of solutions and melts of self-avoiding and highly flexible polymer chains without chain intersections confined to strictly two dimensions is investigated by means of…

Soft Condensed Matter · Physics 2012-09-03 N. Schulmann , H. Meyer , P. Polińska , J. Baschnagel , J. P. Wittmer

We study the winding angles of random and self-avoiding walks on square and cubic lattices with number of steps $N$ ranging up to $10^7$. We show that the mean square winding angle $\langle\theta^2\rangle$ of random walks converges to the…

Statistical Mechanics · Physics 2016-07-07 Yosi Hammer , Yacov Kantor

A generalised model for interacting self-avoiding trails on the square lattice is presented and studied using numerical transfer matrix methods. The model differentiates between on-site double visits corresponding to collisions, and…

Statistical Mechanics · Physics 2015-05-30 Damien P. Foster

Advanced chain-growth computer simulation methodologies have been employed for a systematic statistical analysis of the critical behavior of a polymer adsorbing at a substrate. We use finitesize scaling techniques to investigate the…

Soft Condensed Matter · Physics 2017-05-09 J. A. Plascak , Paulo H. L. Martins , Michael Bachmann

We investigate a lattice model of polymers where the nearest-neighbour monomer-monomer interaction strengths differ according to whether the local configurations have so-called ``hydrogen-like'' formations or not. If the interaction…

Soft Condensed Matter · Physics 2009-11-13 J Krawczyk , A L Owczarek , T Prellberg

We address the problem of inverse polymer swelling. This phenomenon, in which a collapsed polymer chain swells upon decreasing temperature, can be observed experimentally in so-called thermoreversible homopolymers in aqueous solution, and…

Soft Condensed Matter · Physics 2007-05-23 Marco Pretti

We consider a one-dimensional directed polymer in a random potential which is characterized by the Gaussian statistics with the finite size local correlations. It is shown that the well-known Kardar's solution obtained originally for a…

Statistical Mechanics · Physics 2009-10-30 S. E. Korshunov , Vik. S. Dotsenko