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Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently…

Motivation: Biomedical named-entity normalization involves connecting biomedical entities with distinct database identifiers in order to facilitate data integration across various fields of biology. Existing systems for biomedical named…

The rapidly increasing volume of electronic health record (EHR) data underscores a pressing need to unlock biomedical knowledge from unstructured clinical texts to support advancements in data-driven clinical systems, including patient…

Supervised models trained to predict properties from representations have been achieving high accuracy on a variety of tasks. For instance, the BERT family seems to work exceptionally well on the downstream task from NER tagging to the…

The availability of large amounts of computer-readable textual data and hardware that can process the data has shifted the focus of knowledge projects towards deep learning architecture. Natural Language Processing, particularly the task of…

In the legal domain it is important to differentiate between words in general, and afterwards to link the occurrences of the same entities. The topic to solve these challenges is called Named-Entity Linking (NEL). Current supervised neural…

We propose an efficient modeling framework for cross-lingual named entity recognition in semi-structured text data. Our approach relies on both knowledge distillation and consistency training. The modeling framework leverages knowledge from…

Biomedical Named Entity Recognition (BioNER), task6 in BioASQ (A challenge in large-scale biomedical semantic indexing and question answering), is crucial for extracting information from scientific literature but faces hurdles such as…

In automatic speech recognition, many studies have shown performance improvements using language models (LMs). Recent studies have tried to use bidirectional LMs (biLMs) instead of conventional unidirectional LMs (uniLMs) for rescoring the…

This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data. In particular, we look into the application of (i) rule-based, (ii) deep learning and (iii) transfer learning…

The introduction of Large Language Models (LLMs), and the vast volume of publicly available medical data, amplified the application of NLP to the medical domain. However, LLMs are pretrained on data that are not explicitly relevant to the…

Named Entity Recognition (NER) aims to extract and classify entity mentions in the text into pre-defined types (e.g., organization or person name). Recently, many works have been proposed to shape the NER as a machine reading comprehension…

Biomedical Named Entity Recognition presents significant challenges due to the complexity of biomedical terminology and inconsistencies in annotation across datasets. This paper introduces SRU-NER (Slot-based Recurrent Unit NER), a novel…

Neural methods have been shown to achieve high performance in Named Entity Recognition (NER), but rely on costly high-quality labeled data for training, which is not always available across languages. While previous works have shown that…

Using token representation from bidirectional language models (LMs) such as BERT is still a widely used approach for token-classification tasks. Even though there exist much larger unidirectional LMs such as Llama-2, they are rarely used to…

Named Entity Recognition (NER) involves identifying and categorizing named entities within textual data. Despite its significance, NER research has often overlooked low-resource languages like Myanmar (Burmese), primarily due to the lack of…

In this paper, we introduce a novel weighted co-training approach that is guided by Large Language Models (LLMs). Namely, in our co-training approach, we use LLM labels on unlabeled data as target labels and co-train two encoder-only based…

Pre-trained word embeddings learned from unlabeled text have become a standard component of neural network architectures for NLP tasks. However, in most cases, the recurrent network that operates on word-level representations to produce…

In recent years, Deep Learning (DL) models are becoming important due to their demonstrated success at overcoming complex learning problems. DL models have been applied effectively for different Natural Language Processing (NLP) tasks such…

Named entity recognition (NER) is the very first step in the linguistic processing of any new domain. It is currently a common process in BioNLP on English clinical text. However, it is still in its infancy in other major languages, as it…