Related papers: On DNA Codes using the Ring Z4 + wZ4
In this paper, we mainly study quaternary linear codes and their binary subfield codes. First we obtain a general explicit relationship between quaternary linear codes and their binary subfield codes in terms of generator matrices and…
We study a new class of codes over Z_2 x Z_2 which we call L-codes. They arise as a natural fifth step in a series of analogies between Kleinian codes, binary codes, lattices and vertex operator algebras. This analogy will be explained in…
Being able to store and transmit human genome sequences is an important part in genomic research and industrial applications. The complete human genome has 3.1 billion base pairs (haploid), and storing the entire genome naively takes about…
In this paper we investigate codes over finite commutative rings R, whose generator matrices are built from \$\alpha\$-circulant matrices. For a non-trivial ideal I<R we give a method to lift such codes over R/I to codes over R, such that…
We describe a strategy for constructing codes for DNA-based information storage by serial composition of weighted finite-state transducers. The resulting state machines can integrate correction of substitution errors; synchronization by…
The paper represents three supplements to the source paper, q-bio/0610044 [q-bio.OT], with three new series of harmonic structures of the genetic code, determined by Gauss arithmetical algorithm; by Table of Minimal Adding, as in…
We consider a new family of codes, termed asymmetric Lee distance codes, that arise in the design and implementation of DNA-based storage systems and systems with parallel string transmission protocols. The codewords are defined over a…
Error-correcting codes over sets, with applications to DNA storage, are studied. The DNA-storage channel receives a set of sequences, and produces a corrupted version of the set, including sequence loss, symbol substitution, symbol…
A new family of binary linear completely transitive (and, therefore, completely regular) codes is constructed. The covering radius of these codes is growing with the length of the code. In particular, for any integer r > 1, there exist two…
Mutually Uncorrelated (MU) codes are a class of codes in which no proper prefix of one codeword is a suffix of another codeword. These codes were originally studied for synchronization purposes and recently, Yazdi et al. showed their…
It is shown that the residue code of a self-dual $\mathbb{Z}_4$-code of length $24k$ (resp.\ $24k+8$) and minimum Lee weight $8k+4 \text{ or }8k+2$ (resp.\ $8k+8 \text{ or }8k+6$) is a binary extremal doubly even self-dual code for every…
A Type IV-II Z4-code is a self-dual code over Z4 with the property that all Euclidean weights are divisible by eight and all codewords have even Hamming weight. In this paper we use generalized bent functions for a construction of…
In this article, we construct infinite families of quaternary (that is, over the ring $\mathbb{Z}_4$) $\mathcal{C}_{D}$-codes, where the defining set $D$ is derived utilizing a two-generator simplicial complex, and determine their Lee…
We consider the problem of storing and retrieving information from synthetic DNA media. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on their collection of substrings…
Given a set of sequences, the distance between pairs of them helps us to find their similarity and derive structural relationship amongst them. For genomic sequences such measures make it possible to construct the evolution tree of…
In this paper, we develop the theory of convolutional codes over finite commutative chain rings. In particular, we focus on maximum distance profile (MDP) convolutional codes and we provide a characterization of these codes, generalizing…
Let $F_2$ be the binary field and $Z_{2^r}$ the residue class ring of integers modulo $2^r$, where $r$ is a positive integer. For the finite $16$-element commutative local Frobenius non-chain ring $Z_4+uZ_4$, where $u$ is nilpotent of index…
A code ${\cal C}$ is $\Z_2\Z_4$-additive if the set of coordinates can be partitioned into two subsets $X$ and $Y$ such that the punctured code of ${\cal C}$ by deleting the coordinates outside $X$ (respectively, $Y$) is a binary linear…
We define the complexity of DNA sequences as the information content per nucleotide, calculated by means of some Lempel-Ziv data compression algorithm. It is possible to use the statistics of the complexity values of the functional regions…
The genetic code is connection between 64 codons, which are building blocks of the genes, and 20 amino acids, which are building blocks of the proteins. In addition to coding amino acids, a few codons code stop signal, which is at the end…