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Dynamics of various biological filaments can be understood within the framework of active polymer models. Here we consider a bead-spring model for a flexible polymer chain in which the active interaction among the beads is introduced via an…
Disordered filamentous networks with compliant crosslinks exhibit a low linear elastic shear modulus at small strains, but stiffen dramatically at high strains. Experiments have shown that the elastic modulus can increase by up to three…
Observations of molecular clouds reveal a complex structure, with gas and dust often arranged in filamentary rather than spherical geometries. The associations of pre- and proto- stellar cores with the filaments suggest a direct link with…
Motivated by the recent theoretical studies on a two-dimensional (2D) chiral Hamiltonian based on the Su-Schrieffer-Heeger chains, we experimentally and computationally demonstrate that topological flat frequency bands can occur at open…
In this paper, we study the bead model: beads are threaded on a set of wires on the plane represented by parallel straight lines. We add the constraint that between two consecutive beads on a wire; there must be exactly one bead on each…
The cytoskeleton is an inhomogeneous network of semi-flexible filaments, which are involved in a wide variety of active biological processes. Although the cytoskeletal filaments can be very stiff and embedded in a dense and cross-linked…
We introduce a mathematical model for the mechanical behaviour of the eukaryotic cell cytoskeleton. This discrete model involves a regular array of pre-stressed protein filaments that exhibit resistance to enthalpic stretching, joined at…
We present numerical simulations of reorienting oblique shocks that form in the collision layer between magnetized colliding flows. Reorientation aligns parsec-scale post-shock filaments normal to the background magnetic field. We find that…
A weak fluctuating magnetic field embedded into a turbulent conducting medium grows exponentially while its characteristic scale decays. In the ISM and protogalactic plasmas, the magnetic Pr is very large, so a broad spectrum of growing…
We investigate the stability and geometrically non-linear dynamics of slender rods made of a linear isotropic poroelastic material. Dimensional reduction leads to the evolution equation for the shape of the poroelastica where, in addition…
Magnetic reconnection occurring in collisionless environments is a multi-scale process involving both ion and electron kinetic processes. Because of their small mass, the electron scales are difficult to resolve in numerical and satellite…
This paper presents the calculation of the bounce-averaged drift of trapped particles in a near-axis framework for axisymmetric and quasisymmetric magnetic fields that possess up-down and stellarator symmetry respectively. This analytic…
Macroscopic elastic core-shell systems can be generated as toy models to be deformed and haptically studied by hand. On the mesoscale, colloidal core-shell particles and microgels are fabricated and investigated by different types of…
Mechanochemical simulations of actomyosin networks are traditionally based on one-dimensional models of actin filaments having zero width. Here, and in the follow up paper, approaches are presented for more efficient modelling which…
We present a simple discrete formula for the elastic energy of a bilayer. The formula is convenient for rapidly computing equilibrium configurations of actuated bilayers of general initial shapes. We use maps of principal curvatures and…
Semiflexible polymers such as filamentous actin play a vital role in the mechanical behavior of cells, yet the basic properties of cross-linked F-actin networks remain poorly understood. To address this issue, we have performed numerical…
We show that grains can be efficiently aligned by interacting with a subsonic gaseous flow. The alignment arises from grains having irregularities that scatter atoms with different efficiency in the right and left directions. The grains…
Particle production via parametric resonance in the early Universe, is a nonperturbative, non-linear and out-of-equilibrium phenomenon. Although it is a well studied topic, whenever a new scenario exhibits parametric resonance, a full…
This study is motivated by recent observations on the ubiquitous interstellar density filaments and guided by the modern theory of magnetohydrodynamic (MHD) turbulence. The interstellar turbulence shapes the observed density structure. The…
A new preconditioner is developed for high order finite element approximation of linear elastic problems on triangular meshes in two dimensions. The new preconditioner results in a condition number that is bounded independently of the…