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Super-resolution Structured Illumination Microscopy (SR-SIM) enables fluorescence microscopy beyond the diffraction limit at high frame rates. Compared to other super-resolution microscopy techniques, the low photon fluence used in SR-SIM…

Functional ultrasound imaging (fUSI) is a cutting-edge technology that measures changes in cerebral blood volume (CBV) by detecting backscattered echoes from red blood cells moving within its field of view (FOV). It offers high…

Neurons and Cognition · Quantitative Biology 2025-08-20 Jared Deighton , Shan Zhong , Kofi Agyeman , Wooseong Choi , Charles Liu , Darrin Lee , Vasileios Maroulas , Vasileios Christopoulos

Fluorescence lifetime imaging microscopy (FLIM) is a powerful tool for quantitative fluorescence imaging because fluorescence lifetime is independent of concentration of fluorescent molecules or excitation/detection efficiency and is robust…

Brain-Computer Interfaces enable direct communication between the brain and external systems, with functional Near-Infrared Spectroscopy emerging as a portable and non-invasive method for capturing cerebral hemodynamics. This study…

Neurons and Cognition · Quantitative Biology 2025-05-16 Mohammad Ghalavand , Javad Hatami , Seyed Kamaledin Setarehdan , Hananeh Ghalavand

We propose neural network layers that explicitly combine frequency and image feature representations and show that they can be used as a versatile building block for reconstruction from frequency space data. Our work is motivated by the…

Computer Vision and Pattern Recognition · Computer Science 2023-06-29 Nalini M. Singh , Juan Eugenio Iglesias , Elfar Adalsteinsson , Adrian V. Dalca , Polina Golland

Recent studies show that deep learning (DL) based MRI reconstruction outperforms conventional methods, such as parallel imaging and compressed sensing (CS), in multiple applications. Unlike CS that is typically implemented with…

Image and Video Processing · Electrical Eng. & Systems 2022-08-22 Hongyi Gu , Burhaneddin Yaman , Steen Moeller , Il Yong Chun , Mehmet Akçakaya

This paper presents an adaptive image sampling algorithm based on Deep Learning (DL). The adaptive sampling mask generation network is jointly trained with an image inpainting network. The sampling rate is controlled in the mask generation…

Computer Vision and Pattern Recognition · Computer Science 2019-12-17 Qiqin Dai , Henry Chopp , Emeline Pouyet , Oliver Cossairt , Marc Walton , Aggelos K. Katsaggelos

Machine learning applied to computer vision and signal processing is achieving results comparable to the human brain on specific tasks due to the great improvements brought by the deep neural networks (DNN). The majority of state-of-the-art…

Computer Vision and Pattern Recognition · Computer Science 2020-06-30 José Augusto Stuchi , Levy Boccato , Romis Attux

We present a widefield fluorescence microscope that integrates an event-based image sensor (EBIS) with a CMOS image sensor (CIS) for ultra-fast microscopy with spectral distinction capabilities. The EBIS achieves temporal resolution of…

Optics · Physics 2024-10-22 Richard G. Baird , Apratim Majumder , Rajesh Menon

We present a video compressive sensing framework, termed kt-CSLDS, to accelerate the image acquisition process of dynamic magnetic resonance imaging (MRI). We are inspired by a state-of-the-art model for video compressive sensing that…

Computer Vision and Pattern Recognition · Computer Science 2014-02-04 Jianing V. Shi , Wotao Yin , Aswin C. Sankaranarayanan , Richard G. Baraniuk

The goal of this paper is to present a non-iterative and more importantly an extremely fast algorithm to reconstruct images from compressively sensed (CS) random measurements. To this end, we propose a novel convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2016-03-09 Kuldeep Kulkarni , Suhas Lohit , Pavan Turaga , Ronan Kerviche , Amit Ashok

Traditional fluorescence microscopy is constrained by inherent trade-offs among resolution, field-of-view, and system complexity. To navigate these challenges, we introduce a simple and low-cost computational multi-aperture miniature…

Optics · Physics 2024-05-31 Qianwan Yang , Ruipeng Guo , Guorong Hu , Yujia Xue , Yunzhe Li , Lei Tian

Hyperspectral imaging (HSI) provides rich spatial-spectral information but remains costly to acquire due to hardware limitations and the difficulty of reconstructing three-dimensional data from compressed measurements. Although compressive…

Computer Vision and Pattern Recognition · Computer Science 2025-10-03 Yi Ai , Yuanhao Cai , Yulun Zhang , Xiaokang Yang

Recent years have witnessed the success of deep networks in compressed sensing (CS), which allows for a significant reduction in sampling cost and has gained growing attention since its inception. In this paper, we propose a new practical…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Bin Chen , Jian Zhang

Background: Image reconstruction from highly undersampled 4D flow MRI data can be very time consuming and may result in significant underestimation of velocities depending on regularization, thereby limiting the applicability of the method.…

Medical Physics · Physics 2025-04-01 Luuk Jacobs , Marco Piccirelli , Valery Vishnevskiy , Sebastian Kozerke

Compressed sensing (CS) is a new signal acquisition paradigm that enables the reconstruction of signals and images from a low number of samples. A particularly exciting application of CS is Magnetic Resonance Imaging (MRI), where CS…

Information Theory · Computer Science 2016-08-17 Samuel Birns , Bohyun Kim , Stephanie Ku , Kevin Stangl , Deanna Needell

Magnetic Resonance Spectroscopic Imaging (MRSI) is a non-invasive imaging technique for studying metabolism and has become a crucial tool for understanding neurological diseases, cancers and diabetes. High spatial resolution MRSI is needed…

We report the cell biological applications of a recently developed multiphoton fluorescence lifetime imaging microscopy system using a streak camera (StreakFLIM). The system was calibrated with standard fluorophore specimens and was shown…

Cell Behavior · Quantitative Biology 2009-11-10 R. V. Krishnan , Eva Biener , Jian-Hua Zhang , Robert Heckel , Brian Herman

Deep learning and Convolutional Neural Networks (CNNs) have driven major transformations in diverse research areas. However, their limitations in handling low-frequency information present obstacles in certain tasks like interpreting global…

Computer Vision and Pattern Recognition · Computer Science 2024-03-14 Fuzhi Wu , Jiasong Wu , Youyong Kong , Chunfeng Yang , Guanyu Yang , Huazhong Shu , Guy Carrault , Lotfi Senhadji

In this paper, we introduce a simple, yet powerful pipeline for medical image segmentation that combines Fully Convolutional Networks (FCNs) with Fully Convolutional Residual Networks (FC-ResNets). We propose and examine a design that takes…

Computer Vision and Pattern Recognition · Computer Science 2017-02-20 Michal Drozdzal , Gabriel Chartrand , Eugene Vorontsov , Lisa Di Jorio , An Tang , Adriana Romero , Yoshua Bengio , Chris Pal , Samuel Kadoury
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