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We consider evolution algebras and their related substructures: evolution ideals and evolution subalgebras. After exposing some of the concepts related to them in the literature, we explore the order structures that arise in the sets of…

Rings and Algebras · Mathematics 2025-05-06 Alejandro González Nevado

In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some…

Machine Learning · Computer Science 2020-07-03 Hoang NT , Takanori Maehara

The origin of diversification and coexistence of genes and species have been traditionally studied in isolated biological levels. Ecological and evolutionary views have focused on the mechanisms that enable or constrain species coexistence,…

Populations and Evolution · Quantitative Biology 2008-07-18 Carlos J. Melian , David Alonso , Diego P. Vazquez , James Regetz

An automorphism defined on an evolution algebra can provide both a finite number and an infinite number of evolution operators on it. This question is dealt with in the paper, as well as others more related to the evolution operators of…

Rings and Algebras · Mathematics 2023-01-23 Desamparados Fernández-Ternero , Víctor M. Gómez-Sousa , Juan Núñez-Valdés

We consider two graph invariants inspired by quantum walks- one in continuous time and one in discrete time. We will associate a matrix algebra called a cellular algebra with every graph. We show that, if the cellular algebras of two graphs…

Combinatorics · Mathematics 2015-03-19 Jamie Smith

Evolution algebras with one dimensional square are classified using the theory of inner product spaces. More precisely, for $A$ an evolution algebra with $\dim(A^2) = 1$ and $a$ a generator of $A^2$, the product of $A$ is given by $xy =…

Rings and Algebras · Mathematics 2021-03-03 Chad Brache , Dolores Martín Barquero , Cándido Martín González , Juana Sánchez-Ortega

In this paper we present a method for finding the absorbing radical of a finite-dimensional evolution algebra. Such a method consists of finding the acyclic vertices of an oriented graph associated with the algebra. The set of generators…

Rings and Algebras · Mathematics 2023-06-28 Paula Cadavid , Tiago Reis , Mary Luz Rodiño

Let A be an evolution algebra (possibly infinite-dimensional) equipped with a fixed natural basis B, and let E be the associated graph defined by Elduque and Labra. We describe the group of automorphisms of A that are diagonalizable with…

Let $G$ be a group. The directed endomorphism graph, $\dend(G)$ of $G$ is a directed graph with vertex set $G$ and there is a directed edge from the vertex $a$ to the vertex $b$ if $a \neq b$ and there exists an endomorphism on $G$ mapping…

Group Theory · Mathematics 2025-11-20 Midhuna V Ajith , Peter J Cameron , Mainak Ghosh , Aparna Lakshmanan S

These notes concern aspects of various graphs whose vertex set is a group $G$ and whose edges reflect group structure in some way (so that they are invariant under the action of the automorphism group of $G$). The graphs I will discuss are…

Group Theory · Mathematics 2021-03-29 Peter J. Cameron

To any directed graph we associate an algebra with edges of the graph as generators and with relations defined by all pairs of directed paths with the same origin and terminus. Such algebras are related to factorizations of polynomials over…

Quantum Algebra · Mathematics 2016-09-07 Israel Gelfand , Vladimir Retakh , Shirlei Serconek , Robert Lee Wilson

Evolutionary games on graphs play an important role in the study of evolution of cooperation in applied biology. Using rigorous mathematical concepts from a dynamical systems and graph theoretical point of view, we formalize the notions of…

Dynamical Systems · Mathematics 2014-11-18 Jeremias Epperlein , Stefan Siegmund , Petr Stehlík

Evolutionary graph theory is a well established framework for modelling the evolution of social behaviours in structured populations. An emerging consensus in this field is that graphs that exhibit heterogeneity in the number of connections…

Populations and Evolution · Quantitative Biology 2018-11-20 Wes Maciejewski , Feng Fu , Christoph Hauert

In this paper we introduce a new species of evolution algebras that we call Cayley evolution algebras. We show that if a field $k$ contains sufficiently many elements (for example if $k$ is infinite) then every finite group $G$ is…

Rings and Algebras · Mathematics 2023-03-10 Cristina Costoya , Vicente Muñoz , Alicia Tocino , Antonio Viruel

We define varieties of algebras for an arbitrary endofunctor on a cocomplete category using pairs of natural transformations. This approach is proved to be equivalent to the one of equational classes defined by equation arrows. Free…

Category Theory · Mathematics 2009-04-13 Jan Pavlík

Random graphs are more and more used for modeling real world networks such as evolutionary networks of proteins. For this purpose we look at two different models and analyze how properties like connectedness and degree distributions are…

Probability · Mathematics 2019-02-05 Klemens Taglieber , Uta Freiberg

Understanding the structure of a graph along with the structure of its subgraphs is important for several problems in graph theory. Two examples are the Reconstruction Conjecture and isomorph-free generation. This paper raises the question…

Combinatorics · Mathematics 2009-09-18 Stephen G. Hartke , Hannah Kolb , Jared Nishikawa , Derrick Stolee

We define a graph structure associated in a natural way to finite fields that nevertheless distinguishes between different models of isomorphic fields.

Number Theory · Mathematics 2020-12-24 Anders Karlsson , Gaëtan Kuhn

The mitosis process of an eukaryotic cell can be represented by the structure constants of an evolution algebra. Any isotopism of the latter corresponds to a mutation of genotypes of the former. This paper uses Computational Algebraic…

Rings and Algebras · Mathematics 2019-01-08 Óscar J. Falcón , Raúl M. Falcón , Juan Núñez

Genetic and evolution algebras arise naturally from applied probability and stochastic processes. Gibbs measures describe interacting systems commonly studied in thermodynamics and statistical mechanics with applications in several fields.…

Mathematical Physics · Physics 2025-05-05 Cristian F. Coletti , Lucas R. de Lima , Denis A. Luiz