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RNA co-transcriptionality, where RNA is spliced or folded during transcription from DNA templates, offers promising potential for molecular programming. It enables programmable folding of nano-scale RNA structures and has recently been…
Bernard Lang defines parsing as the calculation of the intersection of a FSA (the input) and a CFG. Viewing the input for parsing as a FSA rather than as a string combines well with some approaches in speech understanding systems, in which…
This paper proposes a min-max design of noise-shaping delta-sigma modulators. We first characterize the all stabilizing loop-filters for a linearized modulator model. By this characterization, we formulate the design problem of lowpass,…
Short text classification is a crucial and challenging aspect of Natural Language Processing. For this reason, there are numerous highly specialized short text classifiers. However, in recent short text research, State of the Art (SOTA)…
We generalize the concept of synchronizing words for finite automata, which map all states of the automata to the same state, to deterministic visibly push-down automata. Here, a synchronizing word w does not only map all states to the same…
Regular expressions provide a flexible means for matching strings and they are often used in data-intensive applications. They are formally equivalent to either deterministic finite automata (DFAs) or nondeterministic finite automata…
Synchronization strings are recently introduced by Haeupler and Shahrasbi [HS17a] in the study of codes for correcting insertion and deletion errors (insdel codes). A synchronization string is an encoding of the indices of the symbols in a…
We introduce the notion of adaptive synchronisation for pushdown automata, in which there is an external observer who has no knowledge about the current state of the pushdown automaton, but can observe the contents of the stack. The…
In this paper we revisit Safra's determinization constructions for automata on infinite words. We show how to construct deterministic automata with fewer states and, most importantly, parity acceptance conditions. Determinization is used in…
#NFA refers to the problem of counting the words of length $n$ accepted by a non-deterministic finite automaton. #NFA is #P-hard, and although fully-polynomial-time randomized approximation schemes (FPRAS) exist, they are all impractical.…
We generalize an efficient automata-based approach to string constraint solving, the stabilization-based method behind the solver Z3-Noodler, to support relational constraints represented by finite-state transducers (useful, for example,…
A deterministic finite-state automaton (FSA) is an abstract sequential machine that reads the symbols comprising an input word one at a time. An FSA is symmetric if its output is independent of the order in which the input symbols are read,…
Minimizing the difference of two submodular (DS) functions is a problem that naturally occurs in various machine learning problems. Although it is well known that a DS problem can be equivalently formulated as the minimization of the…
Algorithms for (nondeterministic) finite-state tree automata (FTAs) are often tested on random FTAs, in which all internal transitions are equiprobable. The run-time results obtained in this manner are usually overly optimistic as most such…
A quantum finite-state automaton (QFA) is a theoretical model designed to simulate the evolution of a quantum system with finite memory in response to sequential input strings. We define the language of a QFA as the set of strings that lead…
Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time…
Angluin's L$^*$ algorithm learns the minimal deterministic finite automaton (DFA) of a regular language using membership and equivalence queries. Its probabilistic approximatively correct (PAC) version substitutes an equivalence query by…
Motivated by the study of genome rearrangements, the NP-hard Minimum Common String Partition problems asks, given two strings, to split both strings into an identical set of blocks. We consider an extension of this problem to unbalanced…
We introduce a high-level language with Python-like syntax for string-to-string, polyregular, first-order definable transductions. This language features function calls, boolean variables, and nested for-loops. We devise and implement a…
While regexp matching is a powerful mechanism for finding patterns in data streams, regexp engines in general only find matches that do not overlap. Moreover, different forms of nondeterministic exploration, where symbols read are processed…