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Motivation: Revealing structural variations across sequences of closely related individuals or species is crucial for understanding their diversification mechanisms and roles. Results: We developed PatchWorkPlot, a tool for visualization of…

Quantitative Methods · Quantitative Biology 2025-03-27 Mariia Pospelova , Yana Safonova

This paper presents matching logic, a first-order logic (FOL) variant for specifying and reasoning about structure by means of patterns and pattern matching. Its sentences, the patterns, are constructed using variables, symbols, connectives…

Logic in Computer Science · Computer Science 2019-03-14 Grigore Rosu

Term rewriting systems have a simple syntax and semantics and facilitate proofs of correctness. However, they are not as popular in industry or academia as imperative languages. We define a term rewriting based abstract programming language…

Programming Languages · Computer Science 2020-07-08 David Plaisted , Lee Barnett

Recent work has proposed a promising approach to improving scalability of program synthesis by allowing the user to supply a syntactic template that constrains the space of potential programs. Unfortunately, creating templates often…

Programming Languages · Computer Science 2017-04-18 Jeevana Priya Inala , Nadia Polikarpova , Xiaokang Qiu , Benjamin S. Lerner , Armando Solar-Lezama

In today's software world with its cornucopia of reusable software libraries, when a programmer is faced with a programming task that they suspect can be completed through the use of a library, they often look for code examples using a…

Software Engineering · Computer Science 2021-10-08 Geert Heyman , Rafael Huysegems , Pascal Justen , Tom Van Cutsem

This paper describes a new technique, called "knowledge patterns", for helping construct axiom-rich, formal ontologies, based on identifying and explicitly representing recurring patterns of knowledge (theory schemata) in the ontology, and…

Artificial Intelligence · Computer Science 2020-05-12 Peter Clark , John Thompson , Bruce Porter

Developing automatic Math Word Problem (MWP) solvers has been an interest of NLP researchers since the 1960s. Over the last few years, there are a growing number of datasets and deep learning-based methods proposed for effectively solving…

Computation and Language · Computer Science 2021-09-21 Yihuai Lan , Lei Wang , Qiyuan Zhang , Yunshi Lan , Bing Tian Dai , Yan Wang , Dongxiang Zhang , Ee-Peng Lim

Feature matching is one of the most fundamental and active research areas in computer vision. A comprehensive evaluation of feature matchers is necessary, since it would advance both the development of this field and also high-level…

Computer Vision and Pattern Recognition · Computer Science 2018-08-08 JiaWang Bian , Ruihan Yang , Yun Liu , Le Zhang , Ming-Ming Cheng , Ian Reid , WenHai Wu

Aligning terminological resources, including ontologies, controlled vocabularies, taxonomies, and value sets is a critical part of data integration in many domains such as healthcare, chemistry, and biomedical research. Entity mapping is…

The problem of using structured methods to represent knowledge is well-known in conceptual modeling and has been studied for many years. It has been proven that adopting modeling patterns represents an effective structural method. Patterns…

InferPy is a Python package for probabilistic modeling with deep neural networks. It defines a user-friendly API that trades-off model complexity with ease of use, unlike other libraries whose focus is on dealing with very general…

Machine Learning · Computer Science 2020-02-13 Javier Cózar , Rafael Cabañas , Antonio Salmerón , Andrés R. Masegosa

Schema Matching, i.e. the process of discovering semantic correspondences between concepts adopted in different data source schemas, has been a key topic in Database and Artificial Intelligence research areas for many years. In the past, it…

Databases · Computer Science 2014-07-11 Santa Agreste , Pasquale De Meo , Emilio Ferrara , Domenico Ursino

Theano is a Python library that allows to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. Since its introduction, it has been one of the most used CPU and GPU mathematical compilers -…

Symbolic Computation · Computer Science 2016-05-10 The Theano Development Team , Rami Al-Rfou , Guillaume Alain , Amjad Almahairi , Christof Angermueller , Dzmitry Bahdanau , Nicolas Ballas , Frédéric Bastien , Justin Bayer , Anatoly Belikov , Alexander Belopolsky , Yoshua Bengio , Arnaud Bergeron , James Bergstra , Valentin Bisson , Josh Bleecher Snyder , Nicolas Bouchard , Nicolas Boulanger-Lewandowski , Xavier Bouthillier , Alexandre de Brébisson , Olivier Breuleux , Pierre-Luc Carrier , Kyunghyun Cho , Jan Chorowski , Paul Christiano , Tim Cooijmans , Marc-Alexandre Côté , Myriam Côté , Aaron Courville , Yann N. Dauphin , Olivier Delalleau , Julien Demouth , Guillaume Desjardins , Sander Dieleman , Laurent Dinh , Mélanie Ducoffe , Vincent Dumoulin , Samira Ebrahimi Kahou , Dumitru Erhan , Ziye Fan , Orhan Firat , Mathieu Germain , Xavier Glorot , Ian Goodfellow , Matt Graham , Caglar Gulcehre , Philippe Hamel , Iban Harlouchet , Jean-Philippe Heng , Balázs Hidasi , Sina Honari , Arjun Jain , Sébastien Jean , Kai Jia , Mikhail Korobov , Vivek Kulkarni , Alex Lamb , Pascal Lamblin , Eric Larsen , César Laurent , Sean Lee , Simon Lefrancois , Simon Lemieux , Nicholas Léonard , Zhouhan Lin , Jesse A. Livezey , Cory Lorenz , Jeremiah Lowin , Qianli Ma , Pierre-Antoine Manzagol , Olivier Mastropietro , Robert T. McGibbon , Roland Memisevic , Bart van Merriënboer , Vincent Michalski , Mehdi Mirza , Alberto Orlandi , Christopher Pal , Razvan Pascanu , Mohammad Pezeshki , Colin Raffel , Daniel Renshaw , Matthew Rocklin , Adriana Romero , Markus Roth , Peter Sadowski , John Salvatier , François Savard , Jan Schlüter , John Schulman , Gabriel Schwartz , Iulian Vlad Serban , Dmitriy Serdyuk , Samira Shabanian , Étienne Simon , Sigurd Spieckermann , S. Ramana Subramanyam , Jakub Sygnowski , Jérémie Tanguay , Gijs van Tulder , Joseph Turian , Sebastian Urban , Pascal Vincent , Francesco Visin , Harm de Vries , David Warde-Farley , Dustin J. Webb , Matthew Willson , Kelvin Xu , Lijun Xue , Li Yao , Saizheng Zhang , Ying Zhang

This paper describes a deep-SDM framework, MALPOLON. Written in Python and built upon the PyTorch library, this framework aims to facilitate training and inferences of deep species distribution models (deep-SDM) and sharing for users with…

Machine Learning · Computer Science 2024-09-27 Theo Larcher , Lukas Picek , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Alexis Joly

Program translation is a growing demand in software engineering. Manual program translation requires programming expertise in source and target language. One way to automate this process is to make use of the big data of programs, i.e., Big…

Software Engineering · Computer Science 2021-03-25 Binger Chen , Ziawasch Abedjan

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

ABCpy is a highly modular scientific library for Approximate Bayesian Computation (ABC) written in Python. The main contribution of this paper is to document a software engineering effort that enables domain scientists to easily apply ABC…

Domain-specific constraint patterns are introduced, which form the counterpart to design patterns in software engineering for the constraint programming setting. These patterns describe the expert knowledge and best-practice solution to…

Software Engineering · Computer Science 2022-06-07 Sophia Saller , Jana Koehler

We present a framework for tree-based proof search, called Zippy. Unlike existing proof search tools, Zippy is largely independent of concrete search tree representations, search-algorithms, states and effects. It is designed to create…

Logic in Computer Science · Computer Science 2025-03-27 Kevin Kappelmann

Python bindings are a critical bridge between high-performance C++ libraries and the flexibility of Python, enabling rapid prototyping, reproducible experiments, and integration with simulation and learning frameworks in robotics research.…

Robotics · Computer Science 2026-03-06 Weihang Guo , Theodoros Tyrovouzis , Lydia E. Kavraki