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We have created a knowledge graph based on major data sources used in ecotoxicological risk assessment. We have applied this knowledge graph to an important task in risk assessment, namely chemical effect prediction. We have evaluated nine…

Artificial Intelligence · Computer Science 2022-03-31 Erik B. Myklebust , Ernesto Jiménez-Ruiz , Jiaoyan Chen , Raoul Wolf , Knut Erik Tollefsen

Inferring knowledge from clinical trials using knowledge graph embedding is an emerging area. However, customizing graph embeddings for different use cases remains a significant challenge. We propose custom2vec, an algorithmic framework to…

Machine Learning · Computer Science 2023-01-02 Xiong Liu , Iya Khalil , Murthy Devarakonda

Acquiring valuable data from the rapidly expanding information on the internet has become a significant concern, and recommender systems have emerged as a widely used and effective tool for helping users discover items of interest. The…

Information Retrieval · Computer Science 2025-02-25 Jinfeng Xu , Zheyu Chen , Shuo Yang , Jinze Li , Wei Wang , Xiping Hu , Steven Hoi , Edith Ngai

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

To solve the information explosion problem and enhance user experience in various online applications, recommender systems have been developed to model users preferences. Although numerous efforts have been made toward more personalized…

Information Retrieval · Computer Science 2020-03-03 Qingyu Guo , Fuzhen Zhuang , Chuan Qin , Hengshu Zhu , Xing Xie , Hui Xiong , Qing He

Large language models (LLMs) have demonstrated prominent reasoning capabilities in recommendation tasks by transforming them into text-generation tasks. However, existing approaches either disregard or ineffectively model the user-item…

Information Retrieval · Computer Science 2024-11-19 Xinfeng Wang , Jin Cui , Fumiyo Fukumoto , Yoshimi Suzuki

Recommender systems (RS) serve as a fundamental tool for navigating the vast expanse of online information, with deep learning advancements playing an increasingly important role in improving ranking accuracy. Among these, graph neural…

Information Retrieval · Computer Science 2025-02-18 Bin Wu , Yihang Wang , Yuanhao Zeng , Jiawei Liu , Jiashu Zhao , Cheng Yang , Yawen Li , Long Xia , Dawei Yin , Chuan Shi

Medical knowledge graphs (KGs) are essential for clinical decision support and biomedical research, yet they often exhibit incompleteness due to knowledge gaps and structural limitations in medical coding systems. This issue is particularly…

Computation and Language · Computer Science 2025-04-01 Xinyu Yao , Aditya Sannabhadti , Holly Wiberg , Karmel S. Shehadeh , Rema Padman

We introduce a novel graph-based Retrieval-Augmented Generation (RAG) framework specifically designed for the medical domain, called \textbf{MedGraphRAG}, aimed at enhancing Large Language Model (LLM) capabilities for generating…

Computer Vision and Pattern Recognition · Computer Science 2024-10-17 Junde Wu , Jiayuan Zhu , Yunli Qi , Jingkun Chen , Min Xu , Filippo Menolascina , Vicente Grau

Learning effective embedding has been proved to be useful in many real-world problems, such as recommender systems, search ranking and online advertisement. However, one of the challenges is data sparsity in learning large-scale item…

Machine Learning · Computer Science 2019-05-27 Yi Ouyang , Bin Guo , Xing Tang , Xiuqiang He , Jian Xiong , Zhiwen Yu

In the era of explosive growth in academic literature, the burden of literature review on scholars are increasing. Proactively recommending academic papers that align with scholars' literature needs in the research process has become one of…

Information Retrieval · Computer Science 2026-01-28 Haixu Xi , Heng Zhang , Chengzhi Zhang

Knowledge-intensive tasks pose a significant challenge for Machine Learning (ML) techniques. Commonly adopted methods, such as Large Language Models (LLMs), often exhibit limitations when applied to such tasks. Nevertheless, there have been…

Machine Learning · Computer Science 2024-05-20 Albert Sawczyn , Jakub Binkowski , Piotr Bielak , Tomasz Kajdanowicz

Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that…

Artificial Intelligence · Computer Science 2024-03-29 Nicolas Hubert , Heiko Paulheim , Armelle Brun , Davy Monticolo

Graph embedding is the task of representing nodes of a graph in a low-dimensional space and its applications for graph tasks have gained significant traction in academia and industry. The primary difference among the many recently proposed…

Social and Information Networks · Computer Science 2019-08-28 Palash Goyal , Di Huang , Ankita Goswami , Sujit Rokka Chhetri , Arquimedes Canedo , Emilio Ferrara

With the rapid prevalence of mobile devices and the dramatic proliferation of mobile applications (apps), app recommendation becomes an emergent task that would benefit both app users and stockholders. How to effectively organize and make…

Information Retrieval · Computer Science 2025-09-11 Mingwei Zhang , Jiawei Zhao , Hai Dong , Ke Deng , Ying Liu

In many machine learning tasks, models are trained to predict structure data such as graphs. For example, in natural language processing, it is very common to parse texts into dependency trees or abstract meaning representation (AMR)…

Computation and Language · Computer Science 2022-01-25 Hoang Thanh Lam , Gabriele Picco , Yufang Hou , Young-Suk Lee , Lam M. Nguyen , Dzung T. Phan , Vanessa López , Ramon Fernandez Astudillo

Aiming at the limitations of traditional medical decision system in processing large-scale heterogeneous medical data and realizing highly personalized recommendation, this paper introduces a personalized medical decision algorithm…

Machine Learning · Computer Science 2024-05-29 Yafeng Yan , Shuyao He , Zhou Yu , Jiajie Yuan , Ziang Liu , Yan Chen

Recommender system is one of the most important information services on today's Internet. Recently, graph neural networks have become the new state-of-the-art approach to recommender systems. In this survey, we conduct a comprehensive…

Information Retrieval · Computer Science 2023-01-13 Chen Gao , Yu Zheng , Nian Li , Yinfeng Li , Yingrong Qin , Jinghua Piao , Yuhan Quan , Jianxin Chang , Depeng Jin , Xiangnan He , Yong Li

Machine learning, deep learning, and NLP methods on knowledge graphs are present in different fields and have important roles in various domains from self-driving cars to friend recommendations on social media platforms. However, to apply…

Machine Learning · Computer Science 2024-09-25 Elika Bozorgi , Sakher Khalil Alqaiidi , Afsaneh Shams , Hamid Reza Arabnia , Krzysztof Kochut

User purchasing prediction with multi-behavior information remains a challenging problem for current recommendation systems. Various methods have been proposed to address it via leveraging the advantages of graph neural networks (GNNs) or…

Information Retrieval · Computer Science 2022-01-20 Haoran Yang , Hongxu Chen , Lin Li , Philip S. Yu , Guandong Xu