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Machine learning is a modern approach to problem-solving and task automation. In particular, machine learning is concerned with the development and applications of algorithms that can recognize patterns in data and use them for predictive…

In recent years, ideas from statistics and scientific computing have begun to interact in increasingly sophisticated and fruitful ways with ideas from computer science and the theory of algorithms to aid in the development of improved…

Data Structures and Algorithms · Computer Science 2010-10-11 Michael W. Mahoney

Causal structure learning refers to a process of identifying causal structures from observational data, and it can have multiple applications in biomedicine and health care. This paper provides a practical review and tutorial on scalable…

Machine Learning · Computer Science 2023-01-20 Pulakesh Upadhyaya , Kai Zhang , Can Li , Xiaoqian Jiang , Yejin Kim

The rapid development of high-throughput sequencing technologies has led to an explosive increase in biological sequence data, making sequence clustering a fundamental task in large-scale bioinformatics analyses. Unlike traditional…

Genomics · Quantitative Biology 2026-01-22 Simeng Zhang , Xinying Liu , Jun Lou , Mudi Jiang , Quan Zou , Zengyou He

With rapid growth in the amount of unstructured data produced by memory-intensive applications, large scale data analytics has recently attracted increasing interest. Processing, managing and analyzing this huge amount of data poses several…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-29 Farshid Farhat , Diman Zad Tootaghaj , Mohammad Arjomand

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural…

Optical imaging of the brain has expanded dramatically in the past two decades. New optics, indicators, and experimental paradigms are now enabling in-vivo imaging from the synaptic to the cortex-wide scales. To match the resulting flood of…

Image and Video Processing · Electrical Eng. & Systems 2024-02-15 Gal Mishne , Adam Charles

In the past 30 years, scientists have searched nature, including animals and insects, and biology in order to discover, understand, and model solutions for solving large-scale science challenges. The study of bionics reveals that how the…

Neural and Evolutionary Computing · Computer Science 2022-02-09 Farid Ghareh Mohammadi , Farzan Shenavarmasouleh , Khaled Rasheed , Thiab Taha , M. Hadi Amini , Hamid R. Arabnia

In the modern world, technology is at its peak. Different avenues in programming and technology have been explored for data analysis, automation, and robotics. Machine learning is key to optimize data analysis, make accurate predictions,…

Subcellular Processes · Quantitative Biology 2023-10-18 Akshay Bhalla , Suraj Rajendran

Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes a domain of its own to achieve neutral comparisons of…

Other Quantitative Biology · Quantitative Biology 2025-07-24 Izaskun Mallona , Charlotte Soneson , Ben Carrillo , Almut Luetge , Daniel Incicau , Reto Gerber , Anthony Sonrel , Mark D. Robinson

With the rapid growth of Internet technologies, cloud computing and social networks have become ubiquitous. An increasing number of people participate in social networks and massive online social data are obtained. In order to exploit…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-02-23 Chencheng Li , Pan Zhou , Yingxue Zhou , Kaigui Bian , Tao Jiang , Susanto Rahardja

In recent years, the state-of-the-art in deep learning has been dominated by very large models that have been pre-trained on vast amounts of data. The paradigm is very simple: investing more computational resources (optimally) leads to…

Machine Learning · Computer Science 2024-05-24 Sotiris Anagnostidis , Gregor Bachmann , Imanol Schlag , Thomas Hofmann

Data mining algorithms are originally designed by assuming the data is available at one centralized site.These algorithms also assume that the whole data is fit into main memory while running the algorithm. But in today's scenario the data…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-03 Aruna Govada , Bhavul Gauri , S. K. Sahay

In the Machine Learning research community, there is a consensus regarding the relationship between model complexity and the required amount of data and computation power. In real world applications, these computational requirements are not…

Machine Learning · Computer Science 2022-08-03 Joao Fonseca , Fernando Bacao

The area of online machine learning in big data streams covers algorithms that are (1) distributed and (2) work from data streams with only a limited possibility to store past data. The first requirement mostly concerns software…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-19 András A. Benczúr , Levente Kocsis , Róbert Pálovics

Using machine learning, especially deep learning, to facilitate biological research is a fascinating research direction. However, in addition to the standard classification or regression problems, in bioinformatics, we often need to predict…

Quantitative Methods · Quantitative Biology 2020-08-31 Yu Li

Decision making algorithms are used in a multitude of different applications. Conventional approaches for designing decision algorithms employ principled and simplified modelling, based on which one can determine decisions via tractable…

Signal Processing · Electrical Eng. & Systems 2022-06-23 Nir Shlezinger , Yonina C. Eldar , Stephen P. Boyd

The applicability of computational models to the biological world is an active topic of debate. We argue that a useful path forward results from abandoning hard boundaries between categories and adopting an observer-dependent, pragmatic…

Multiagent Systems · Computer Science 2022-12-22 Joshua Bongard , Michael Levin

Clustering algorithms remain valuable tools for grouping and summarizing the most important aspects of data. Example areas where this is the case include image segmentation, dimension reduction, signals analysis, model order reduction,…

Numerical Analysis · Mathematics 2024-12-24 Guy B. Oldaker , Maria Emelianenko

Data Mining is the process of extracting useful patterns from the huge amount of database and many data mining techniques are used for mining these patterns. Recently, one of the remarkable facts in higher educational institute is the rapid…

Artificial Intelligence · Computer Science 2014-05-16 Priyanka Saini