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Many materials, processes, and structures in science and engineering have important features at multiple scales of time and/or space; examples include biological tissues, active matter, oceans, networks, and images. Explicitly extracting,…

Fluid Dynamics · Physics 2021-01-12 Daniel Floryan , Michael D. Graham

Topological Data Analysis (TDA) can be used to detect and characterize holes in an image, such as zero-dimensional holes (connected components) or one-dimensional holes (loops). However, there is currently no widely accepted statistical…

Methodology · Statistics 2025-08-26 Susan Glenn , Jessi Cisewski-Kehe , Jun Zhu , William M Bement

Topological data analysis (TDA) is a rising field in the intersection of mathematics, statistics, and computer science/data science. The cornerstone of TDA is persistent homology, which produces a summary of topological information called a…

Computational Geometry · Computer Science 2022-05-24 Yu-Min Chung , Michael Hull , Austin Lawson , Neil Pritchard

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

Machine Learning · Statistics 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

TopoDetect is a Python package that allows the user to investigate if important topological features, such as the Degree of the nodes, their Triangle Count, or their Local Clustering Score, are preserved in the embeddings of graph…

Machine Learning · Computer Science 2021-10-11 Maroun Haddad , Mohamed Bouguessa

Multidimensional persistence studies topological features of shapes by analyzing the lower level sets of vector-valued functions. The rank invariant completely determines the multidimensional analogue of persistent homology groups. We prove…

Algebraic Topology · Mathematics 2009-08-04 Andrea Cerri , Barbara Di Fabio , Massimo Ferri , Patrizio Frosini , Claudia Landi

Topological invariants have played a fundamental role in the advancement of theoretical high energy physics. Physicists have used several kinematic techniques to distinguish new physics predictions from the Standard Model (SM) of particle…

High Energy Physics - Phenomenology · Physics 2023-09-18 Jyotiranjan Beuria

Persistence diagrams (PDs), often characterized as sets of death and birth of homology class, have been known for providing a topological representation of a graph structure, which is often useful in machine learning tasks. Prior works rely…

Machine Learning · Computer Science 2022-09-29 Chau Pham , Trung Dang , Peter Chin

Topological data analysis is an emerging field that applies the study of topological invariants to data. Perhaps the simplest of these invariants is the number of connected components or clusters. In this work, we explore a topological…

Computational Geometry · Computer Science 2023-12-19 Ian Stewart Joyce , Grant Erdmann , Kirk P. Gardner , Ryan Kramer , Kyle Siegrist

Topological Data Analysis (TDA) allows us to extract powerful topological and higher-order information on the global shape of a data set or point cloud. Tools like Persistent Homology or the Euler Transform give a single complex description…

Algebraic Topology · Mathematics 2025-11-04 Vincent P. Grande , Michael T. Schaub

Topological data analysis is a powerful tool for describing topological signatures in real world data. An important challenge in topological data analysis is matching significant topological signals across distinct systems. In geometry and…

Algebraic Topology · Mathematics 2025-02-19 Stephen Y Zhang , Michael P H Stumpf , Tom Needham , Agnese Barbensi

Recent years have witnessed an increased interest in the application of persistent homology, a topological tool for data analysis, to machine learning problems. Persistent homology is known for its ability to numerically characterize the…

Neural and Evolutionary Computing · Computer Science 2016-08-29 Jen-Yu Liu , Shyh-Kang Jeng , Yi-Hsuan Yang

The concept of topological persistence, introduced recently in computational topology, finds applications in studying a map in relation to the topology of its domain. Since its introduction, it has been extended and generalized in various…

Algebraic Topology · Mathematics 2015-03-17 Dan Burghelea , Tamal K. Dey , Du Dong

In this paper we develop a novel Topological Data Analysis (TDA) approach for studying graph representations of time series of dynamical systems. Specifically, we show how persistent homology, a tool from TDA, can be used to yield a…

Chaotic Dynamics · Physics 2020-01-28 Audun Myers , Elizabeth Munch , Firas A. Khasawneh

We use topological data analysis (TDA) to study how data transforms as it passes through successive layers of a deep neural network (DNN). We compute the persistent homology of the activation data for each layer of the network and summarize…

Machine Learning · Computer Science 2022-05-09 Matthew Wheeler , Jose Bouza , Peter Bubenik

Persistent homology is a popular and useful tool for analysing finite metric spaces, revealing features that can be used to distinguish sets of unlabeled points and as input into machine learning pipelines. The famous stability theorem of…

Computational Geometry · Computer Science 2024-05-10 Philip Smith , Vitaliy Kurlin

We introduce a nonparametric way to estimate the global probability density function for a random persistence diagram. Precisely, a kernel density function centered at a given persistence diagram and a given bandwidth is constructed. Our…

Statistics Theory · Mathematics 2018-03-14 Joshua Lee Mike , Vasileios Maroulas

Phase separation mechanisms can produce a variety of complicated and intricate microstructures, which often can be difficult to characterize in a quantitative way. In recent years, a number of novel topological metrics for microstructures…

Numerical Analysis · Mathematics 2020-05-29 Paweł Dłotko , Thomas Wanner

Topological Data Analysis (TDA) studies the shape of data. A common topological descriptor is the persistence diagram, which encodes topological features in a topological space at different scales. Turner, Mukeherjee, and Boyer showed that…

Weather regimes provide a useful framework for describing large-scale atmospheric variability and its impacts on regional weather. Despite extensive study, there is still no universally accepted definition or method for identifying weather…

Algebraic Topology · Mathematics 2026-05-21 Soheil Anbouhi