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Objective: Reproducibility is a core tenet of scientific research. A reproducible study is one where the results can be recreated by different investigators in different circumstances using the same methodology and materials. Unfortunately,…

Quantitative Methods · Quantitative Biology 2019-07-17 Aaron Bowers , Shelby Rauh , Drayton Rorah , Daniel Tritz , Lance Frye , Matt Vassar

Scientific workflow management systems offer features for composing complex computational pipelines from modular building blocks, for executing the resulting automated workflows, and for recording the provenance of data products resulting…

Challenges to reproducibility and replicability have gained widespread attention, driven by large replication projects with lukewarm success rates. A nascent work has emerged developing algorithms to estimate the replicability of published…

Digital Libraries · Computer Science 2024-05-06 Chuhao Wu , Tatiana Chakravorti , John Carroll , Sarah Rajtmajer

Scientific processes rely on software as an important tool for data acquisition, analysis, and discovery. Over the years sustainable software development practices have made progress in being considered as an integral component of research.…

Software Engineering · Computer Science 2023-12-21 Akash Dhruv , Anshu Dubey

In open-source software development environments; textual, numerical and relationship-based data generated are of interest to researchers. Various data sets are available for this data, which is frequently used in areas such as software…

Software Engineering · Computer Science 2020-10-01 Abdulkadir Şeker , Banu Diri , Halil Arslan

In recent years, various machine and deep learning architectures have been successfully introduced to the field of predictive process analytics. Nevertheless, the inherent opacity of these algorithms poses a significant challenge for human…

Artificial Intelligence · Computer Science 2024-03-15 Alexander Stevens , Chun Ouyang , Johannes De Smedt , Catarina Moreira

A cross-disciplinary examination of the user behaviours involved in seeking and evaluating data is surprisingly absent from the research data discussion. This review explores the data retrieval literature to identify commonalities in how…

Digital Libraries · Computer Science 2020-03-13 Kathleen Gregory , Paul Groth , Helena Cousijn , Andrea Scharnhorst , Sally Wyatt

The FAIR principles for scientific data (Findable, Accessible, Interoperable, Reusable) are also relevant to other digital objects such as research software and scientific workflows that operate on scientific data. The FAIR principles can…

Digital Libraries · Computer Science 2022-12-16 Sean R. Wilkinson , Greg Eisenhauer , Anuj J. Kapadia , Kathryn Knight , Jeremy Logan , Patrick Widener , Matthew Wolf

Machine learning has the potential to fuel further advances in data science, but it is greatly hindered by an ad hoc design process, poor data hygiene, and a lack of statistical rigor in model evaluation. Recently, these issues have begun…

Machine Learning · Computer Science 2021-08-19 Stella Biderman , Walter J. Scheirer

A reproducibility crisis has been reported in science, but the extent to which it affects AI research is not yet fully understood. Therefore, we performed a systematic replication study including 30 highly cited AI studies relying on…

Artificial Intelligence · Computer Science 2024-12-25 Odd Erik Gundersen , Odd Cappelen , Martin Mølnå , Nicklas Grimstad Nilsen

Scientists often use meta-analysis to characterize the impact of an intervention on some outcome of interest across a body of literature. However, threats to the utility and validity of meta-analytic estimates arise when scientists average…

Human-Computer Interaction · Computer Science 2023-02-21 Alex Kale , Sarah Lee , Terrance Goan , Elizabeth Tipton , Jessica Hullman

Context: The retraction of research papers, for whatever reason, is a growing phenomenon. However, although retracted paper information is publicly available via publishers, it is somewhat distributed and inconsistent. Objective: The aim is…

Digital Libraries · Computer Science 2023-07-19 Martin Shepperd , Leila Yousefi

An ongoing "reproducibility crisis" calls into question scientific discoveries across a variety of disciplines ranging from life to social sciences. Replication studies aim to investigate the validity of findings in published research, and…

Applications · Statistics 2023-05-09 Konstantinos Bourazas , Guido Consonni , Laura Deldossi

Reproducibility is a cornerstone of science, as the replication of findings is the process through which they become knowledge. It is widely considered that many fields of science are undergoing a reproducibility crisis. This has led to the…

Computer Vision and Pattern Recognition · Computer Science 2022-09-13 Olivier Colliot , Elina Thibeau-Sutre , Ninon Burgos

Many research fields are currently reckoning with issues of poor levels of reproducibility. Some label it a "crisis", and research employing or building Machine Learning (ML) models is no exception. Issues including lack of transparency,…

Software Engineering · Computer Science 2025-02-27 Harald Semmelrock , Tony Ross-Hellauer , Simone Kopeinik , Dieter Theiler , Armin Haberl , Stefan Thalmann , Dominik Kowald

The transformations, analyses and interpretations of data in scientific workflows are vital for the repeatability and reliability of scientific workflows. This provenance of scientific workflows has been effectively carried out in Grid…

Databases · Computer Science 2016-11-18 Khawar Hasham , Kamran Munir , Jetendr Shamdasani , Richard McClatchey

Reuse of data in new contexts beyond the purposes for which it was originally collected has contributed to technological innovation and reducing the consent burden on data subjects. One of the legal mechanisms that makes such reuse possible…

Computers and Society · Computer Science 2023-09-06 Asia J. Biega

To reproduce eScience, several challenges need to be solved: scientific workflows need to be automated; the involved software versions need to be provided in an unambiguous way; input data needs to be easily accessible; High-Performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-30 Kessy Abarenkov , Anne Fouilloux , Helmut Neukirchen , Abdulrahman Azab

The use of statistical software in academia and enterprises has been evolving over the last years. More often than not, students, professors, workers, and users, in general, have all had, at some point, exposure to statistical software.…

Applications · Statistics 2019-08-21 Rui Portocarrero Sarmento , Vera Costa

Building Performance Simulation (BPS) uses advanced computational and data science methods. Reproducibility, the ability to obtain the same results by using the same data and methods, is essential in BPS research to ensure the reliability…

Digital Libraries · Computer Science 2025-03-19 Christian Ghiaus