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Gene regulatory networks exhibit remarkable stability, maintaining functional phenotypes despite genetic and environmental perturbations. Discrete dynamical models, such as Boolean networks, provide systems biologists with a tractable…

Molecular Networks · Quantitative Biology 2025-11-25 Claus Kadelka

Molecular communication is set to play an important role in the design of complex biological and chemical systems. An important class of molecular communication systems is based on the timing channel, where information is encoded in the…

Information Theory · Computer Science 2014-10-22 Malcolm Egan , Yansha Deng , Maged Elkashlan , Trung Q. Duong

For a small system like a colloidal particle or a single biomolecule embedded in a heat bath, the optimal protocol of an external control parameter minimizes the mean work required to drive the system from one given equilibrium state to…

Statistical Mechanics · Physics 2009-11-13 Tim Schmiedl , Udo Seifert

This article studies a hyperbolic conservation law that models a highly re-entrant manufacturing system as encountered in semi-conductor production. Characteristic features are the nonlocal character of the velocity and that the influx and…

Optimization and Control · Mathematics 2009-07-08 Jean-Michel Coron , Matthias kawski , Zhiqiang Wang

We propose to model the dynamics of metabolic networks from a systems biology point of view by four dynamical structure elements: potential function, transverse matrix, degradation matrix, and stochastic force. These four elements are…

Molecular Networks · Quantitative Biology 2007-05-23 P. Ao

The concept of control is crucial for effectively understanding and applying biological network models. Key structural features relate to control functions through gene regulation, signaling, or metabolic mechanisms, and computational…

Molecular Networks · Quantitative Biology 2024-11-05 David Murrugarra , Alan Veliz-Cuba , Elena Dimitrova , Claus Kadelka , Matthew Wheeler , Reinhard Laubenbacher

This paper presents, using dynamical system theory, a framework for investigating the turnpike property in nonlinear optimal control. First, it is shown that a turnpike-like property appears in general dynamical systems with hyperbolic…

Optimization and Control · Mathematics 2021-02-10 Noboru Sakamoto , Enrique Zuazua

We derive a monotonicity property for general, transient flows of a commodity transferred throughout a network, where the flow is characterized by density and mass flux dynamics on the edges with density continuity and mass balance…

Optimization and Control · Mathematics 2016-03-31 Anatoly Zlotnik , Sidhant Misra , Marc Vuffray , Michael Chertkov

In this article we are interested in the boundary stabilization in finite time of one-dimensional linear hyperbolic balance laws with coefficients depending on time and space. We extend the so called "backstepping method" by introducing…

Optimization and Control · Mathematics 2020-11-30 Jean-Michel Coron , Long Hu , Guillaume Olive , Peipei Shang

Many situations in physics, biology, and engineering consist of the transport of some physical quantity through a network of narrow channels. The ability of a network to transport such a quantity in every direction can be described by the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Marc Durand , Denis Weaire

In [5], we have designed impulsive and feedback controls for harmonic chains with a point thermostat. In this work, we study the internal control for stochastic lattice dynamics, with the goal of controlling the transition kernel of the…

Optimization and Control · Mathematics 2024-10-02 Amirali Hannani , Minh-Nhat Phung , Minh-Binh Tran , Emmanuel Trélat

We explore the nonlinear dynamics of a macroeconomic model with resource constraints. The dynamics is derived from a production function that considers capital and a generalized form of energy as inputs. Energy, the new variable, is…

Theoretical Economics · Economics 2024-08-30 Frank Schweitzer , Giona Casiraghi

This paper proposes a variational approach to describe the evolution of organization of complex systems from first principles, as increased efficiency of physical action. Most simply stated, physical action is the product of the energy and…

Adaptation and Self-Organizing Systems · Physics 2014-07-29 Georgi Yordanov Georgiev , Kaitlin Henry , Timothy Bates , Erin Gombos , Alexander Casey , Michael Daly , Amrit Vinod , Hyunseung Lee

The problem of state-feedback stabilizability of discrete-time nonlinear systems has been considered in this note. Two assertions have been proved. First, if the system is $N$-step controllable to the origin, then there is a state feedback…

Optimization and Control · Mathematics 2018-04-19 Shigeru Hanba

Control schemes for dynamical systems typically involve stabilizing unstable periodic orbits. In this paper we introduce a new paradigm of control that involves `trapping' the dynamics arbitrarily close to any desired trajectory. This is…

Chaotic Dynamics · Physics 2015-12-08 Shakti N. Menon , S. Sridhar , Sitabhra Sinha

Under suitable assumptions, the dynamic behaviour of a chemical reaction network is governed by an autonomous set of polynomial ordinary differential equations over continuous variables representing the concentrations of the reactant…

Dynamical Systems · Mathematics 2014-07-15 Matthew D. Johnston , David Siegel

Technology has been playing a major role in our lives. One definition for technology is all the knowledge, products, processes, tools,methods and systems employed in the creation of goods or in providing services.This makes technological…

Computers and Society · Computer Science 2019-01-24 M. M. Eljazzar , M. A. Amr , S. S. Kassem , M. Ezzat

In areas such as computer software and hardware, manufacturing systems, and transportation, engineers encounter networks with arbitrarily large numbers of isomorphic subprocesses. Parameterized systems provide a framework for modeling such…

Formal Languages and Automata Theory · Computer Science 2016-10-03 M. H. Zibaeenejad , J. G. Thistle

This paper is motivated by a class of positive systems with an input that is subject to an unknown state-dependent power law delay as well as saturation. For example, biological networks have non-negative protein concentration states. Mass…

Optimization and Control · Mathematics 2022-12-26 Damon E. Ghetmiri , Amor A. Menezes

This paper considers an optimal impulse control problem of dynamical systems generated by a flow. The performance criteria are total costs over the infinite time horizon. Apart from the main performance to be minimized, there are multiple…

Optimization and Control · Mathematics 2020-10-27 Alexey Piunovskiy , Yi Zhang
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