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Related papers: A Bottleneck Principle for Techno-Metabolic Chains

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When presented with a data stream of two statistically dependent variables, predicting the future of one of the variables (the target stream) can benefit from information about both its history and the history of the other variable (the…

Machine Learning · Computer Science 2023-03-10 Damjan Kalajdzievski , Ximeng Mao , Pascal Fortier-Poisson , Guillaume Lajoie , Blake Richards

Network theory is rapidly changing our understanding of complex systems, but the relevance of topological features for the dynamic behavior of metabolic networks, food webs, production systems, information networks, or cascade failures of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Dirk Helbing , Stefan Lämmer

Arthur [1,2] provided a model to explain the circumstances that lead to technological lock-in into a specific trajectory. We contribute substantially to this area of research by investigating the circumstances under which technological…

Physics and Society · Physics 2009-11-09 Wilfred Dolfsma , Loet Leydesdorff

Network flows often exhibit a hierarchical tree-like structure that can be attributed to the minimisation of dissipation. The common feature of such systems is a single source and multiple sinks (or vice versa). In contrast, here we study…

Tissues and Organs · Quantitative Biology 2020-05-27 Julius B. Kirkegaard , Kim Sneppen

Waste production, carbon dioxide atmospheric accumulation, and dependence on finite natural resources are expressions of the unsustainability of the current industrial networks that supply fuels, energy, and manufacturing products. In…

Dynamical Systems · Mathematics 2023-05-16 Federico Zocco , Pantelis Sopasakis , Beatrice Smyth , Wassim M. Haddad

Study of current controlled systems and scientific publications has shown that the architecture of controlled systems, related to the products conversion is based on the principle of austerity and, in general, does not provide the…

Optimization and Control · Mathematics 2015-10-15 Igor Lutsenko

The turnpike phenomenon stipulates that the solution of an optimal control problem in large time, remains essentially close to a steady-state of the dynamics, itself being the optimal solution of an associated static optimal control…

Optimization and Control · Mathematics 2023-01-11 Emmanuel Trélat

We describe a new complex system model of an evolving production economy. This model is the simplest we can envisage which incorporates the new observation that the rate of an economic production process depends only on the minimum of its…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 A. Ponzi , A. Yasutomi , K. Kaneko

In this paper, we seek to measure how much information a component in a neural network could extract from the representations fed into it. Our work stands in contrast to prior probing work, most of which investigates how much information a…

Computation and Language · Computer Science 2022-11-14 Tiago Pimentel , Josef Valvoda , Niklas Stoehr , Ryan Cotterell

We study an energy relaxation process after many degrees of freedom are excited in a Hamiltonian system with a large number of degrees of freedom. Bottlenecks of relaxation, where relaxations of the excited elements are drastically slowed…

Statistical Mechanics · Physics 2009-11-10 Hidetoshi Morita , Kunihiko Kaneko

Deciphering the control principles of metabolism and its interaction with other cellular functions is central to biomedicine and biotechnology. Yet, understanding the efficient control of metabolic fluxes remains elusive for large-scale…

Molecular Networks · Quantitative Biology 2015-09-04 Georg Basler , Zoran Nikoloski , Abdelhalim Larhlimi , Albert-László Barabási , Yang-Yu Liu

This article deals with the problem of maximizing the production of a species for a chemical network by controlling the temperature. Under the so-called mass kinetics assumption the system can be modeled as a single-input control system…

Optimization and Control · Mathematics 2020-01-14 Bernard Bonnard , Jérémy Rouot

Despite their topological complexity almost all functional properties of metabolic networks can be derived from steady-state dynamics. Indeed, many theoretical investigations (like flux-balance analysis) rely on extracting function from…

Molecular Networks · Quantitative Biology 2009-11-13 Carsten Marr , Mark Mueller-Linow , Marc-Thorsten Huett

Networks coming from protein-protein interactions, transcriptional regulation, signaling, or metabolism may appear to have "unusual" properties. To quantify this, it is appropriate to randomize the network and test the hypothesis that the…

Molecular Networks · Quantitative Biology 2011-07-18 Areejit Samal , Olivier C. Martin

In this article, we consider transport networks with uncertain demands. Network dynamics are given by linear hyperbolic partial differential equations and suitable coupling conditions, while demands are incorporated as solutions to…

Optimization and Control · Mathematics 2022-08-16 Simone Göttlich , Thomas Schillinger

This paper develops some basic principles to study autocatalytic networks and exploit their structural properties in order to characterize their inherent fundamental limits and tradeoffs. In a dynamical system with autocatalytic structure,…

Systems and Control · Computer Science 2017-06-30 Milad Siami , Nader Motee , Gentian Buzi , Bassam Bamieh , Mustafa Khammash , John C. Doyle

Adaptive dynamical systems arise in a multitude of contexts, e.g., optimization, control, communications, signal processing, and machine learning. A precise characterization of their fundamental limitations is therefore of paramount…

Information Theory · Computer Science 2010-10-13 Maxim Raginsky

Biomolecular condensates are small droplets forming spontaneously in biological cells via phase separation. They play a role in many cellular processes, but it is unclear how cells control them. Cellular regulation often relies on…

Soft Condensed Matter · Physics 2024-03-15 Jan Kirschbaum , David Zwicker

The minimal set of thermodynamic control parameters consists of a statistical (thermal) and a mechanical one. These suffice to introduce all the pertinent thermodynamic variables; thermodynamic processes can then be defined as paths on this…

Statistical Mechanics · Physics 2009-11-13 Jan Birjukov , Thomas Jahnke , Günter Mahler

Deterministic chaos permits a precise notion of a "perfect measurement" as one that, when obtained repeatedly, captures all of the information created by the system's evolution with minimal redundancy. Finding an optimal measurement is…

Machine Learning · Computer Science 2024-03-21 Kieran A. Murphy , Dani S. Bassett