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Evolutionary analyses of large populations commonly incorporate stochasticity through temporal variation in selection while treating genetic transmission as fixed. Much less attention has been given to stochasticity in transmission itself.…

Populations and Evolution · Quantitative Biology 2026-02-24 Elisa Heinrich-Mora , Marcus Feldman

Cyclic dominance of competing species is an intensively used working hypothesis to explain biodiversity in certain living systems, where the evolutionary selection principle would dictate a single victor otherwise. Technically the…

Populations and Evolution · Quantitative Biology 2021-06-16 D. Bazeia , M. J. B. Ferreira , B. F. de Oliveira , A. Szolnoki

Consider two ancestral lineages sampled from a system of two-dimensional branching random walks with logistic regulation in the stationary regime. We study the asymptotics of their coalescence time for large initial separation and find that…

Probability · Mathematics 2024-05-06 Matthias Birkner , Andrej Depperschmidt , Timo Schlüter

We study a stochastic predator-prey model on a square lattice, where each of the six species has two superior and two inferior partners. The invasion probabilities between species depend on the predator-prey pair and are supplemented by…

Populations and Evolution · Quantitative Biology 2007-08-25 Matjaz Perc , Attila Szolnoki

Evolutionary adaptation is the process that increases the fit of a population to the fitness landscape it inhabits. As a consequence, evolutionary dynamics is shaped, constrained, and channeled, by that fitness landscape. Much work has been…

Populations and Evolution · Quantitative Biology 2010-12-17 Bjørn Østman , Arend Hintze , Christoph Adami

Multi-lane totally asymmetric simple exclusion processes with interactions between the lanes have recently been investigated actively. This paper proposes a two-lane model with extended Langmuir kinetics on a periodic lattice. Both…

Cellular Automata and Lattice Gases · Physics 2022-02-09 Hiroki Yamamoto , Shingo Ichiki , Daichi Yanagisawa , Katsuhiro Nishinari

Selection, mutation and random drift affect the dynamics of allele frequencies and consequently of quantitative traits. While the macroscopic dynamics of quantitative traits can be measured, the underlying allele frequencies are typically…

Populations and Evolution · Quantitative Biology 2016-03-15 Katarína Boďová , Gašper Tkačik , Nicholas H. Barton

We consider conservative cross-diffusion systems for two species where individual motion rates depend linearly on the local density of the other species. We develop duality estimates and obtain stability and approximation results. We first…

Analysis of PDEs · Mathematics 2024-10-30 Vincent Bansaye , Ayman Moussa , Felipe Muñoz-Hernández

Many experimental and field studies have shown that adaptation can occur very rapidly. Two qualitatively different modes of fast adaptation have been proposed: selective sweeps wherein large shifts in the allele frequencies occur at a few…

Populations and Evolution · Quantitative Biology 2018-10-19 Kavita Jain , Wolfgang Stephan

Homologous recombination is an important operator in the evolution of biological organisms. However, there is still no clear, generally accepted understanding of why it exists and under what circumstances it is useful. In this paper we…

Populations and Evolution · Quantitative Biology 2013-08-12 Manuel Beltrán del Río , Christopher R. Stephens , David A. Rosenblueth

Scale independence is a ubiquitous feature of complex systems which implies a highly skewed distribution of resources with no characteristic scale. Research has long focused on why systems as varied as protein networks, evolution and stock…

Physics and Society · Physics 2016-02-08 Laurent Hébert-Dufresne , Antoine Allard , Jean-Gabriel Young , Louis J. Dubé

In considering evolution of transcribed regions, regulatory modules, and other genomic loci of interest, we are often faced with a situation in which the number of allelic states greatly exceeds the population size. In this limit, the…

Populations and Evolution · Quantitative Biology 2016-07-27 Pavel Khromov , Constantin D. Malliaris , Alexandre V. Morozov

A five-species predator-prey model is studied on a square lattice where each species has two prey and two predators on the analogy to the Rock-Paper-Scissors-Lizard-Spock game. The evolution of the spatial distribution of species is…

Populations and Evolution · Quantitative Biology 2013-08-19 Jeromos Vukov , Attila Szolnoki , György Szabó

A two-lane exclusion process is studied where particles move in the two lanes in opposite directions and are able to change lanes. The focus is on the steady state behavior in situations where a positive current is constrained to an…

Statistical Mechanics · Physics 2015-05-14 Róbert Juhász

In this paper we consider two continuous-mass population models as analogues of logistic branching random walks, one is supported on a finite trait space and the other one is supported on an infinite trait space. For the first model with…

Probability · Mathematics 2013-04-18 Anton Bovier , Shi-Dong Wang

We investigate the impact of Allee effect and dispersal on the long-term evolution of a population in a patchy environment, focusing on whether a population already established in one patch either successfully invades an adjacent empty…

Classical Analysis and ODEs · Mathematics 2010-03-02 Yun Kang , Nicolas Lanchier

Noise and spatial degrees of freedom characterize most ecosystems. Some aspects of their influence on the coevolution of populations with cyclic interspecies competition have been demonstrated in recent experiments [e.g. B. Kerr et al.,…

Populations and Evolution · Quantitative Biology 2007-12-08 Tobias Reichenbach , Mauro Mobilia , Erwin Frey

Biochemical and regulatory interactions central to biological networks are expected to cause extensive genetic interactions or epistasis affecting the heritability of complex traits and the distribution of genotypes in populations. However,…

Populations and Evolution · Quantitative Biology 2009-12-15 Richard A. Neher , Boris I. Shraiman

We revisit the classical population genetics model of a population evolving under multiplicative selection, mutation and drift. The number of beneficial alleles in a multi-locus system can be considered a trait under exponential selection.…

adap-org · Physics 2007-05-23 Magnus Rattray , Jonathan L. Shapiro

We study a four species ecological system with cyclic dominance whose individuals are distributed on a square lattice. Randomly chosen individuals migrate to one of the neighboring sites if it is empty or invade this site if occupied by…

Populations and Evolution · Quantitative Biology 2009-11-10 Gyorgy Szabo , Gustavo Arial Sznaider