Related papers: On Maximum Common Subgraph Problems in Series-Para…
In this paper we consider the problem of computing an mRNA sequence of maximal similarity for a given mRNA of secondary structure constraints, introduced by Backofen et al. in [BNS02] denoted as the MRSO problem. The problem is known to be…
Finding the k-medianin a network involves identifying a subset of k vertices that minimize the total distance to all other vertices in a graph. This problem has been extensively studied in computer science, graph theory, operations…
(Induced) Subgraph Isomorphism and Maximum Common (Induced) Subgraph are fundamental problems in graph pattern matching and similarity computation. In graphs derived from time-series data or protein structures, a natural total ordering of…
We consider Colouring on graphs that are $H$-subgraph-free for some fixed graph $H$, which are graphs that do not contain $H$ as a subgraph. To classify the complexity of Colouring on $H$-subgraph-free graphs for connected $H$, it remains…
In the Partial Vertex Cover (PVC) problem, we are given an $n$-vertex graph $G$ and a positive integer $k$, and the objective is to find a vertex subset $S$ of size $k$ maximizing the number of edges with at least one end-point in $S$. This…
The problem of finding a maximum $2$-matching without short cycles has received significant attention due to its relevance to the Hamilton cycle problem. This problem is generalized to finding a maximum $t$-matching which excludes specified…
The quadratic minimum spanning tree problem and its variations such as the quadratic bottleneck spanning tree problem, the minimum spanning tree problem with conflict pair constraints, and the bottleneck spanning tree problem with conflict…
We consider the polyhedral properties of two spanning tree problems with additional constraints. In the first problem, it is required to find a tree with a minimum sum of edge weights among all spanning trees with the number of leaves less…
Given a tree $T$ on $n$ vertices, and $k, b, s_1, \ldots, s_b \in N$, the Tree Partitioning problem asks if at most $k$ edges can be removed from $T$ so that the resulting components can be grouped into $b$ groups such that the number of…
Given a graph $G=(V, E)$, a connected sides cut $(U, V\backslash U)$ or $\delta (U)$ is the set of edges of E linking all vertices of U to all vertices of $V\backslash U$ such that the induced subgraphs $G[U]$ and $G[V\backslash U]$ are…
We develop a structural approach to simultaneous embeddability in temporal sequences of graphs, inspired by graph minor theory. Our main result is a classification theorem for 2-connected temporal sequences: we identify five obstruction…
We introduce a new bilevel version of the classic shortest path problem and completely characterize its computational complexity with respect to several problem variants. In our problem, the leader and the follower each control a subset of…
Spanning trees of complete bipartite graphs exhibit a rich interaction between degree sequences and graph structure. In this paper, we obtain lower bounds on the number of isomorphism classes of spanning trees in $K_{a,b}, 2 \leq a \leq b$…
We introduce a generalization of the well known graph (vertex) coloring problem, which we call the problem of \emph{component coloring of graphs}. Given a graph, the problem is to color the vertices using minimum number of colors so that…
Combinatorial optimization algorithms for graph problems are usually designed afresh for each new problem with careful attention by an expert to the problem structure. In this work, we develop a new framework to solve any combinatorial…
This paper introduces the Simultaneous assignment problem. Let us given a graph with a weight and a capacity function on its edges, and a set of its subgraphs along with a degree upper bound function for each of them. We are also given a…
The independent set on a graph $G=(V,E)$ is a subset of $V$ such that no two vertices in the subset have an edge between them. The MIS problem on $G$ seeks to identify an independent set with maximum cardinality, i.e. maximum independent…
We consider drawings of graphs in the plane in which vertices are assigned distinct points in the plane and edges are drawn as simple curves connecting the vertices and such that the edges intersect only at their common endpoints. There is…
Let $G$ be a complete edge-weighted graph on $n$ vertices. To each subset of vertices of $G$ assign the cost of the minimum spanning tree of the subset as its weight. Suppose that $n$ is a multiple of some fixed positive integer $k$. The…
We present a learning-based approach to computing solutions for certain NP-hard problems. Our approach combines deep learning techniques with useful algorithmic elements from classic heuristics. The central component is a graph…