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Identifying interacting partners from two sets of protein sequences has important applications in computational biology. Interacting partners share similarities across species due to their common evolutionary history, and feature…

Biomolecules · Quantitative Biology 2024-12-31 Umberto Lupo , Damiano Sgarbossa , Martina Milighetti , Anne-Florence Bitbol

The structure of a protein is crucial in determining its functionality, and is much more conserved than sequence during evolution. A key task in structural biology is to compare protein structures in order to determine evolutionary…

Methodology · Statistics 2019-11-06 Christopher Fallaize , Peter Green , Kanti Mardia , Stuart Barber

Developing a reliable and practical face recognition system is a long-standing goal in computer vision research. Existing literature suggests that pixel-wise face alignment is the key to achieve high-accuracy face recognition. By assuming a…

Computer Vision and Pattern Recognition · Computer Science 2015-01-21 Yuting Zhang , Kui Jia , Yueming Wang , Gang Pan , Tsung-Han Chan , Yi Ma

In this work, we introduce MO-SeGMan, a Multi-Objective Sequential and Guided Manipulation planner for highly constrained rearrangement problems. MO-SeGMan generates object placement sequences that minimize both replanning per object and…

Robotics · Computer Science 2025-11-04 Cankut Bora Tuncer , Marc Toussaint , Ozgur S. Oguz

Text-based person search aims to retrieve the corresponding person images in an image database by virtue of a describing sentence about the person, which poses great potential for various applications such as video surveillance. Extracting…

Computer Vision and Pattern Recognition · Computer Science 2019-11-28 Ya Jing , Chenyang Si , Junbo Wang , Wei Wang , Liang Wang , Tieniu Tan

Recent Mamba-based methods for the pose-lifting task tend to model joint dependencies by 2D-to-1D mapping with diverse scanning strategies. Though effective, they struggle to model intricate joint connections and uniformly process all joint…

Computer Vision and Pattern Recognition · Computer Science 2025-07-29 Ye Lu , Jie Wang , Jianjun Gao , Rui Gong , Chen Cai , Kim-Hui Yap

Previous work on cross-lingual sequence labeling tasks either requires parallel data or bridges the two languages through word-byword matching. Such requirements and assumptions are infeasible for most languages, especially for languages…

Computation and Language · Computer Science 2019-10-25 Zuyi Bao , Rui Huang , Chen Li , Kenny Q. Zhu

Robotic manipulation in everyday scenarios, especially in unstructured environments, requires skills in pose-aware object manipulation (POM), which adapts robots' grasping and handling according to an object's 6D pose. Recognizing an…

Robotics · Computer Science 2024-03-21 Qiaojun Yu , Ce Hao , Junbo Wang , Wenhai Liu , Liu Liu , Yao Mu , Yang You , Hengxu Yan , Cewu Lu

Learning medical visual representations from image-report pairs through joint learning has garnered increasing research attention due to its potential to alleviate the data scarcity problem in the medical domain. The primary challenges stem…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Jun Wang , Lixing Zhu , Xiaohan Yu , Abhir Bhalerao , Yulan He

The substantial memory demands of pre-training and fine-tuning large language models (LLMs) require memory-efficient optimization algorithms. One promising approach is layer-wise optimization, which treats each transformer block as a single…

Machine Learning · Computer Science 2026-01-15 Yuxi Liu , Renjia Deng , Yutong He , Xue Wang , Tao Yao , Kun Yuan

Network alignment (NA) aims to find a node mapping between molecular networks of different species that identifies topologically or functionally similar network regions. Analogous to genomic sequence alignment, NA can be used to transfer…

Molecular Networks · Quantitative Biology 2016-04-07 Vipin Vijayan , Tijana Milenkovic

Conventional cell tracking methods detect multiple cells in each frame (detection) and then associate the detection results in successive time-frames (association). Most cell tracking methods perform the association task independently from…

Computer Vision and Pattern Recognition · Computer Science 2020-02-27 Junya Hayashida , Kazuya Nishimura , Ryoma Bise

Multimodal aspect-based sentiment analysis (MABSA) aims to understand opinions in a granular manner, advancing human-computer interaction and other fields. Traditionally, MABSA methods use a joint prediction approach to identify aspects and…

Computation and Language · Computer Science 2024-06-14 Shezheng Song , Shasha Li , Shan Zhao , Chengyu Wang , Xiaopeng Li , Jie Yu , Qian Wan , Jun Ma , Tianwei Yan , Wentao Ma , Xiaoguang Mao

We propose PESA, a novel approach combining Particle Swarm Optimisation (PSO), Evolution Strategy (ES), and Simulated Annealing (SA) in a hybrid Algorithm, inspired from reinforcement learning. PESA hybridizes the three algorithms by…

Neural and Evolutionary Computing · Computer Science 2020-09-21 Majdi I. Radaideh , Koroush Shirvan

This paper investigates a novel communication paradigm employing movable antennas (MAs) within a multiple-input single-output (MISO) non-orthogonal multiple access (NOMA) downlink framework, where users are equipped with MAs. Initially,…

Information Theory · Computer Science 2024-08-09 Yufeng Zhou , Wen Chen , Qingqing Wu , Xusheng Zhu , Nan Cheng

Many biological questions, including the estimation of deep evolutionary histories and the detection of remote homology between protein sequences, rely upon multiple sequence alignments (MSAs) and phylogenetic trees of large datasets.…

Genomics · Quantitative Biology 2015-04-07 Nam-phuong Nguyen , Siavash Mirarab , Keerthana Kumar , Tandy Warnow

Real-world data such as digital images, MRI scans and electroencephalography signals are naturally represented as matrices with structural information. Most existing classifiers aim to capture these structures by regularizing the regression…

Machine Learning · Statistics 2018-12-31 Yunfei Ye , Dong Han

Inferring the structural properties of a protein from its amino acid sequence is a challenging yet important problem in biology. Structures are not known for the vast majority of protein sequences, but structure is critical for…

Machine Learning · Computer Science 2019-10-17 Tristan Bepler , Bonnie Berger

This paper presents a new approach to statistical similarity assessment based on sequence alignment. The algorithm performs mutual matching of two random sequences by successively searching for common elements and by applying sequence…

Signal Processing · Electrical Eng. & Systems 2021-06-09 Jakub Nikonowicz , Łukasz Matuszewski , Paweł Kubczak

Recently, few-shot learning (FSL) has become a popular task that aims to recognize new classes from only a few labeled examples and has been widely applied in fields such as natural science, remote sensing, and medical images. However, most…

Computer Vision and Pattern Recognition · Computer Science 2026-02-12 Liwen Wu , Wei Wang , Lei Zhao , Zhan Gao , Qika Lin , Shaowen Yao , Zuozhu Liu , Bin Pu
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