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We demonstrate and characterize a first-principles approach to modeling the mass action dynamics of metabolism. Starting from a basic definition of entropy expressed as a multinomial probability density using Boltzmann probabilities with…

Chemical Physics · Physics 2024-07-10 William R. Cannon , Samuel Britton , Mikahl Banwarth-Kuhn , Mark Alber

We examine the dynamics of entanglement entropy of all parts in an open system consisting of a two-level dimer interacting with an environment of oscillators. The dimer-environment interaction is almost energy conserving. We find the…

Quantum Physics · Physics 2018-05-09 M. Merkli , G. P. Berman , R. T. Sayre , X. Wang , A. I. Nesterov

Active matter encompasses systems whose individual consituents dissipate energy to exert propelling forces on their environment. This rapidly developing field harbors a dynamical phenomenology with no counterpart in passive systems. The…

Statistical Mechanics · Physics 2023-12-19 Jérémy O'Byrne , Yariv Kafri , Julien Tailleur , Frédéric van Wijland

It is proposed that the spatial (and temporal) patterns spontaneously appearing in dissipative systems maximize the energy flow through the pattern forming interface. In other words - the patterns maximize the entropy growth rate in an…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kestutis Staliunas

Most natural thermodynamic systems operate far from equilibrium, developing persistent currents and organizing into non-equilibrium stationary states (NESSs). Yet, the principles by which such systems self-organize, breaking equilibrium…

Statistical Mechanics · Physics 2025-11-11 Matteo Sireci , Luca Peliti , Daniel Maria Busiello

The expressions for entropy production, free energy, and entropy extraction rates are derived for a Brownian particle that walks in an underdamped medium. Our analysis indicates that as long as the system is driven out of equilibrium, it…

Statistical Mechanics · Physics 2021-02-18 Mesfin Asfaw Taye

We discuss differential-- versus integral--equation based methods describing out--of thermal equilibrium systems and emphasize the importance of a well defined reduction to statistical observables. Applying the projection operator approach,…

High Energy Physics - Theory · Physics 2011-09-13 Herbert Nachbagauer

We derive a bound for entropy production in terms of the mean of normalizable path-antisymmetric observables. The optimal observable for this bound is shown to be the signum of entropy production, which is often easier determined or…

Statistical Mechanics · Physics 2024-10-07 Gabriel Knotz , Till M. Muenker , Timo Betz , Matthias Krüger

For discrete-time stochastic processes, there is a close connection between return/waiting times and entropy. Such a connection cannot be straightforwardly extended to the continuous-time setting. Contrarily to the discrete-time case one…

Probability · Mathematics 2007-05-23 Jean-Rene Chazottes , Cristian Giardina , Frank Redig

We study the current rectification of particles moving in a pulsating channel under the in uence of an applied force. We have shown the existence of diferent rectification scenarios in which entropic and energetic effects compete. The…

Soft Condensed Matter · Physics 2018-06-13 M. Florencia Carusela , J. Miguel Rubi

The tendency of irreversible processes to generate entropy is the ultimate driving force for the evolution of nature. In engineering, entropy production is often used as a measure of usable energy losses. In this study we show that the…

Geophysics · Physics 2018-10-30 Yi Yang , Stefan Bruns , Susan Stipp , Henning Sørensen

The fluctuation-response relation is a fundamental relation that is applicable to systems near equilibrium. On the other hand, when a system is driven far from equilibrium, this relation is violated in general because the detailed-balance…

Statistical Mechanics · Physics 2009-11-11 Takahiro Harada , Shin-ichi Sasa

We show for a large class of interacting particle systems that whenever the stationary measure is not reversible for the dynamics, then the mean entropy production in the steady state is strictly positive. This extends to the thermodynamic…

Statistical Mechanics · Physics 2015-05-26 C. Maes , F. Redig , M. Verschuere

Reliable evaluation protocols are of utmost importance for reproducible NLP research. In this work, we show that sometimes neither metric nor conventional human evaluation is sufficient to draw conclusions about system performance. Using…

Computation and Language · Computer Science 2021-01-25 Yevgeniy Puzikov

We study the thermodynamic efficiency of the Malkus-Lorenz waterwheel. For this purpose, we derive an exact analytical formula that describes the efficiency of this dissipative structure as a function of the phase space variables and the…

Statistical Mechanics · Physics 2023-05-24 Álvaro G. López , Fernando Benito , Juan Sabuco , Alfonso Delgado-Bonal

Living cells use readout molecules to record the state of receptor proteins, similar to measurements or copies in typical computational devices. But is this analogy rigorous? Can cells be optimally efficient, and if not, why? We show that,…

Statistical Mechanics · Physics 2017-04-19 Thomas E. Ouldridge , Pieter Rein ten Wolde

Some microscopic dynamics are also macroscopically irreversible, dissipating energy and producing entropy. For many-particle systems interacting with deterministic thermostats, the rate of thermodynamic entropy dissipated to the environment…

Classical Physics · Physics 2025-01-13 Swetamber Das , Jason R. Green

When a system is perturbed by the variation of external parameters, a lag generally develops between the actual state of the system and the equilibrium state corresponding to the current parameter values. We establish a microscopic,…

Statistical Mechanics · Physics 2010-12-16 Suriyanarayanan Vaikuntanathan , Christopher Jarzynski

We investigate the problem of minimizing the entropy production for a physical process that can be described in terms of a Markov jump dynamics. We show that, without any further constraints, a given time-evolution may be realized at…

Statistical Mechanics · Physics 2022-02-16 Andreas Dechant

The unprecedented extension of the human lifespan necessitates a parallel evolution in how we quantify the quality of aging and its socioeconomic impact. Traditional metrics focusing on Healthspan (years free of disease) overlook the…

Quantitative Methods · Quantitative Biology 2026-03-19 Alex Zhavoronkov , Dominika Wilczok
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