Related papers: Nearest Common Ancestors: Universal Trees and Impr…

A labeled tree (or a trie) is a natural generalization of a string, which can also be seen as a compact representation of a set of strings. This paper considers the labeled tree indexing problem, and provides a number of new results on…

We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that…

Let $\Omega_n$ be the family of binary trees on $n$ vertices obtained by identifying the root of an rgood binary tree with a vertex of maximum eccentricity of a binary caterpillar. In the paper titled "On different middle parts of a tree…

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

In their work on `Coxeter-like complexes', Babson and Reiner introduced a simplicial complex $\Delta_T$ associated to each tree $T$ on $n$ nodes, generalizing chessboard complexes and type A Coxeter complexes. They conjectured that…

Compatibility of phylogenetic trees is the most important concept underlying widely-used methods for assessing the agreement of different phylogenetic trees with overlapping taxa and combining them into common supertrees to reveal the tree…

One of the important features of an interconnection network is its ability to efficiently simulate programs or parallel algorithms written for other architectures. Such a simulation problem can be mathematically formulated as a graph…

For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…

Natural language text corpora are often available as sets of syntactically parsed trees. A wide range of expressive tree queries are possible over such parsed trees that open a new avenue in searching over natural language text. They not…

In this paper we look at the problem of adjacency labeling of graphs. Given a family of undirected graphs the problem is to determine an encoding-decoding scheme for each member of the family such that we can decode the adjacency…

The weighted $3$-Set Packing problem is defined as follows: As input, we are given a collection $\mathcal{S}$ of sets, each of cardinality at most $3$ and equipped with a positive weight. The task is to find a disjoint sub-collection of…

The Graceful Tree Conjecture of Rosa from 1967 asserts that the vertices of each tree T of order n can be injectively labelled by using the numbers {1,2,...,n} in such a way that the absolute differences induced on the edges are pairwise…

Edit distance between trees is a natural generalization of the classical edit distance between strings, in which the allowed elementary operations are contraction, uncontraction and relabeling of an edge. Demaine et al. [ACM Trans. on…

Given a rooted tree $T$ with leaves $v_1,v_2,\ldots,v_n$, we define the ancestral matrix $C(T)$ of $T$ to be the $n \times n$ matrix for which the entry in the $i$-th row, $j$-th column is the level (distance from the root) of the first…

Hierarchical Clustering trees have been widely accepted as a useful form of clustering data, resulting in a prevalence of adopting fields including phylogenetics, image analysis, bioinformatics and more. Recently, Dasgupta (STOC 16')…

Let T=(V,E) be a tree with vertex set V and edge set E. A graceful labelling f of T is an injective function f from V into {0, 1, ..., |E|} such that if edge uv is assigned the label g(uv)=|f(u)-f(v)| then the function g from E into {1,…

We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two new operations, called node fusion and edge fusion, besides the tree edit operations of deletion, insertion, and relabeling…

The classical, ubiquitous, predecessor problem is to construct a data structure for a set of integers that supports fast predecessor queries. Its generalization to weighted trees, a.k.a. the weighted ancestor problem, has been extensively…

Cellular Automata (CA) have long been foundational in simulating dynamical systems computationally. With recent innovations, this model class has been brought into the realm of deep learning by parameterizing the CA's update rule using an…

Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…