Related papers: Nearest Common Ancestors: Universal Trees and Impr…
We are interested in the quantitative analysis of the compaction ratio for two classical families of trees: recursive trees and plane binary increasing trees. These families are typical representatives of tree models with a small depth.…
In biology, a phylogenetic tree is a tool to represent the evolutionary relationship between species. Unfortunately, the classical Schr\"oder tree model is not adapted to take into account the chronology between the branching nodes. In…
Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…
This paper is concerned with the approximation of high-dimensional functions in a statistical learning setting, by empirical risk minimization over model classes of functions in tree-based tensor format. These are particular classes of…
Despite the success of fine-tuning pretrained language encoders like BERT for downstream natural language understanding (NLU) tasks, it is still poorly understood how neural networks change after fine-tuning. In this work, we use centered…
Two rooted locally finite trees are considered equivalent if both can be embedded into each other as topological minors by means of tree-order preserving mappings. By exploiting Nash-William's Theorem, Matthiesen provided a non-constructive…
There is a unique path from the root of a tree to any other vertex. Every vertex, except the root, has a parent: the adjoining vertex on this unique path. This is the conventional definition of the parent vertex. For complete binary trees,…
In this work we introduce and study various generalizations of the notion of increasingly labelled trees, where the label of a child node is always larger than the label of its parent node, to multilabelled tree families, where the nodes in…
Fitch graphs $G=(X,E)$ are digraphs that are explained by $\{\emptyset, 1\}$-edge-labeled rooted trees $T$ with leaf set $X$: there is an arc $(x,y) \in E$ if and only if the unique path in $T$ that connects the last common ancestor…
Following the model introduced by Aguech, Lasmar and Mahmoud [Probab. Engrg. Inform. Sci. 21 (2007) 133-141], the weighted depth of a node in a labelled rooted tree is the sum of all labels on the path connecting the node to the root. We…
The Sackin and Colless indices are two widely-used metrics for measuring the balance of trees and for testing evolutionary models in phylogenetics. This short paper contributes two results about the Sackin and Colless indices of trees. One…
Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…
In this paper, we construct explicitly a noncommutative symmetric (${\mathcal N}$CS) system over the Grossman-Larson Hopf algebra of labeled rooted trees. By the universal property of the ${\mathcal N}$CS system formed by the generating…
A rooted tree $T$ with vertex labels $t(v)$ and set-valued edge labels $\lambda(e)$ defines maps $\delta$ and $\varepsilon$ on the pairs of leaves of $T$ by setting $\delta(x,y)=q$ if the last common ancestor $\text{lca}(x,y)$ of $x$ and…
Canonical correlation analysis (CCA) is a classical representation learning technique for finding correlated variables in multi-view data. Several nonlinear extensions of the original linear CCA have been proposed, including kernel and deep…
The perturbation expansion of the solution of a fixed point equation or of an ordinary differential equation may be expressed as a power series in the perturbation parameter. The terms in this series are indexed by rooted trees and depend…
We introduce the notion of quota trees in directed graphs. Given a nonnegative integer ``quota'' for each vertex of a directed multigraph $G$, a quota tree is an immersed rooted tree which hits each vertex of $G$ the prescribed number of…
The problem of comparing trees representing the evolutionary histories of cancerous tumors has turned out to be crucial, since there is a variety of different methods which typically infer multiple possible trees. A departure from the…
We consider so-called simple families of labelled trees, which contain, e.g., ordered, unordered, binary and cyclic labelled trees as special instances, and study the global and local behaviour of the number of inversions. In particular we…
The search for similarity and dissimilarity measures on phylogenetic trees has been motivated by the computation of consensus trees, the search by similarity in phylogenetic databases, and the assessment of clustering results in…