Related papers: Three-way symbolic tree-maps and ultrametrics
This paper presents the novel `uniqueness tree' algorithm, as one possible method for determining whether two finite, undirected graphs are isomorphic. We prove that the algorithm has polynomial time complexity in the worst case, and that…
Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on…
The structure of road networks plays a pivotal role in shaping transportation dynamics. It also provides insights into how drivers experience city streets and helps uncover each urban environment's unique characteristics and challenges.…
Metric learning is an important problem in machine learning. It aims to group similar examples together. Existing state-of-the-art metric learning approaches require class labels to learn a metric. As obtaining class labels in all…
Labeled unranked trees are used as a model of XML documents, and logical languages for them have been studied actively over the past several years. Such logics have different purposes: some are better suited for extracting data, some for…
Networks having the geometry and the connectivity of trees are considered as the spatial support of spatiotemporal dynamical processes. A tree is characterized by two parameters: its ramification and its depth. The local dynamics at the…
Graphs drawn in the plane are ubiquitous, arising from data sets through a variety of methods ranging from GIS analysis to image classification to shape analysis. A fundamental problem in this type of data is comparison: given a set of such…
Tree-based methods are powerful nonparametric techniques in statistics and machine learning. However, their effectiveness, particularly in finite-sample settings, is not fully understood. Recent applications have revealed their surprising…
The graph isomorphism is to determine whether two graphs are isomorphic. A closely related problem is automorphism detection, where an isomorphism between two graphs is a bijection between their vertex sets that preserves adjacency, and an…
The overlap graphs of subtrees in a tree (SOGs) generalise many other graphs classes with set representation characterisations. The complexity of recognising SOGs in open. The complexities of recognising many subclasses of SOGs are known.…
Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here the rooted triple and quartet metrizations are introduced, and applied to formulate novel fast methods of…
We construct a pair of non-isomorphic, bipartite graphs which are not distinguished by counting the number of homomorphisms to any tree. This answers a question motivated by Atserias et al. (LICS 2021). In order to establish the…
In this paper we develop three characterizations for isomorphism of graphs. The first characterization is obtained by associating certain bitableaux with the graphs. We order these bitableaux by suitably defined lexicographic order and…
We obtain a generating function for the degree sequences and colors of rooted multipartite labeled series-reduced trees. As an application of this result, we determine the number of symbolic ultrametrics (introduced by B\"ocker and Dress)…
Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…
Building trees to represent or to fit distances is a critical component of phylogenetic analysis, metric embeddings, approximation algorithms, geometric graph neural nets, and the analysis of hierarchical data. Much of the previous…
A trigraph is a graph where each pair of vertices is labelled either 0 (a non-arc), 1 (an arc) or $\star$ (both an arc and a non-arc). In a series of papers, Hell and co-authors proposed to study the complexity of homomorphisms from graphs…
In order to conduct a statistical analysis on a given set of phylogenetic gene trees, we often use a distance measure between two trees. In a statistical distance-based method to analyze discordance between gene trees, it is a key to decide…
Merge trees are a type of topological descriptors that record the connectivity among the sublevel sets of scalar fields. They are among the most widely used topological tools in visualization. In this paper, we are interested in sketching a…
For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model predicts, it must be possible to recover the tree parameter.…