Related papers: Combinatorial properties of triplet covers for bin…
We consider $n$-folding triangular curves, or $n$-folding t-curves, obtained by folding $n$ times a strip of paper in $3$, each time possibly left then right or right then left, and unfolding it with $\pi /3$ angles. An example is the well…
We prove that for any two minimal models of an lc algebraically integrable foliated triple on potentially klt varieties, there exist small birational models that are connected by a sequence of flops. In particular, any two minimal models of…
Let $M$ be a fibered 3-manifold with multiple boundary components. We show that the fiber structure of $M$ transforms to closely related transversely oriented taut foliations realizing all rational multislopes in some open neighborhood of…
We give a short and direct proof of a remarkable identity that arises in the enumeration of labeled trees with respect to their indegree sequence, where all edges are oriented from the vertex with lower label towards the vertex with higher…
Generalizing a well known theorem for finite matroids, we prove that for every (infinite) connected matroid M there is a unique tree T such that the nodes of T correspond to minors of M that are either 3-connected or circuits or cocircuits,…
We prove the sufficiency of the Linear Superposition Principle for linear trees, which characterizes the spectra achievable by a real symmetric matrix whose underlying graph is a linear tree. The necessity was previously proven in 2014.…
It is known that any two trees on the same $n$ leaves can be displayed by a network with $n-2$ reticulations, and there are two trees that cannot be displayed by a network with fewer reticulations. But how many reticulations are needed to…
We characterize the compatibility of a collection of unrooted phylogenetic trees as a question of determining whether a graph derived from these trees --- the display graph --- has a specific kind of triangulation, which we call legal. Our…
Graphs drawn in the plane are ubiquitous, arising from data sets through a variety of methods ranging from GIS analysis to image classification to shape analysis. A fundamental problem in this type of data is comparison: given a set of such…
In this paper and a companion paper, we prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as…
In their work on `Coxeter-like complexes', Babson and Reiner introduced a simplicial complex $\Delta_T$ associated to each tree $T$ on $n$ nodes, generalizing chessboard complexes and type A Coxeter complexes. They conjectured that…
The combinatorics of RNA plays a central role in biology. Mathematical biologists have several commonly-used models for RNA: words in a fixed alphabet (representing the primary sequence of nucleotides) and plane trees (representing the…
Relative notions of combinatorial asphericity have been used to prove that injective labeled oriented trees (which encode spines of ribbon 2-knots) are aspherical. This article presents an overview and comparison of the different notions of…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. Here we explore the practical impact of kernelization (i.e. data reduction) on the NP-hard problem of computing the TBR distance between two unrooted binary…
In a recent paper on 'Estimating Species Trees from Unrooted Gene Trees' Liu and Yu observe that the distance matrix on the underlying taxon set, which is built up from expected internode distances on gene trees under the multispecies…
In evolutionary biology, phylogenetic trees are commonly inferred from a set of characters (partitions) of a collection of biological entities (e.g., species or individuals in a population). Such characters naturally arise from molecular…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
Using the theory of Properly Embedded Graphs developed in an earlier work we define an involutory duality on the set labeled non-crossing trees that lifts the obvious duality in the set of unlabeled non-crossing trees. The set of…
Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…
A {\it tiered graph} $G=(V,E)$ with $m $ tiers is a simple graph with $V\subseteq \brk{n}$, where $\brk{n}=\{1,2,\cdots,n\}$, and with a surjective map $t$ from $V$ to $\brk{m}$ such that if $v$ is a vertex adjacent to $v'$ in $G$ with…