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Related papers: Sucralose Interaction with Protein Structures

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The increase of aqueous solubility of nonpolar compounds upon cooling and the cold denaturation of proteins are established experimental facts. Both phenomena have been hypothesized to be related to restructuring of the hydrogen bond…

Soft Condensed Matter · Physics 2007-05-23 Sergey V. Buldyrev , Pradeep Kumar , H. Eugene Stanley

We compare the ability of a simulated annealing program and an evolutionary algorithm to find molecules with large molecular average hyperpolarizabilities. This property is an important component of nonlinear optical materials. Both…

Computational Physics · Physics 2026-02-19 Dominic Mashak , S. A. Alexander

Nonnative residual interactions have attracted increasing attention in recent protein folding researches. Experimental and theoretical investigations had been set out to catch nonnative contacts that might dominate key events in protein…

Biological Physics · Physics 2017-01-30 Yunxiang Sun , Dengming Ming

Per- and polyfluoroalkyl substances are a class of synthetic chemical compounds widely used as coatings to lower surface energies. Yet the microscopic mechanisms of their weak interaction with water and organic compounds remain poorly…

Chemical Physics · Physics 2026-04-06 Maximilian R. Becker , Ruben Cruz , Kenichi Ataka , Joachim Heberle , Roland R. Netz

Silk cocoons are reconstituted into an aqueous suspension, and protein stability is investigated by comparing the protein's response to hydrochloric acid and sodium chloride. Aggregation occurs at <8 mM hydrochloric acid that is not…

Soft Condensed Matter · Physics 2017-08-16 A. Pasha Tabatabai , Katie M. Weigandt , Daniel L. Blair

Cellular energy production depends on electron transfer (ET) between proteins. In this theoretical study, we investigate the impact of structural and conformational variations on the electronic coupling between the redox proteins…

What are the molecular mechanisms that dictate protein-protein binding stability and whether those are related to the ones behind protein fold stability are still largely open questions. Indeed, despite many past efforts, we still lack…

Biological Physics · Physics 2023-11-28 Fausta Desantis , Mattia Miotto , Lorenzo Di Rienzo , Edoardo Milanetti , Giancarlo Ruocco

We perform simulations of a system containing simple model proteins and a polymer representing chromatin. We study the interplay between protein-protein and protein-chromatin interactions, and the resulting condensates which arise due to…

Soft Condensed Matter · Physics 2022-07-20 Marco Ancona , Chris A. Brackley

The proneness of water to crystallize is a major obstacle to understanding its putative exotic behavior in the supercooled state. It also represents a strong practical limitation to cryopreservation of biological systems. Adding some…

In this work, we consider the stability of a spherical shell under combined loading from a uniform external pressure and a homogenous natural curvature. Non-mechanical stimuli, such as one that tends to modify the rest curvature of an…

Soft Condensed Matter · Physics 2020-08-26 Douglas P. Holmes , Jeong-Ho Lee , Harold S. Park , Matteo Pezzulla

Cracking of suspensions during drying is a common problem. While additives, e.g. binders and surfactants, can mitigate this problem, some applications, such as printing conductive pastes or sintering green bodies, do not lend themselves to…

Soft Condensed Matter · Physics 2021-11-19 Steffen B. Fischer , Erin Koos

This study uses a combination of stochastic optimization, statistical mechanical theory, and molecular simulation to test the extent to which the long-time dynamics of a single tracer particle can be enhanced by rationally modifying its…

Soft Condensed Matter · Physics 2011-11-24 James Carmer , Gaurav Goel , Mark J. Pond , Jeffrey R. Errington , Thomas M. Truskett

Surface effects could play a dominant role in modifying the natural liquid order. In some cases, the effects of the surface interactions can propagate inwards, and even can interfere with a similar propagation from opposite surfaces. This…

Soft Condensed Matter · Physics 2025-06-12 Sayantan Mondal , Saumyak Mukherjee , Biman Bagchi

Several studies have developed dynamical models to understand the underlying mechanisms of insulin signaling, a signaling cascade that leads to the translocation of glucose, the human body's main source of energy. Fortunately, reaction…

Molecular Networks · Quantitative Biology 2023-10-25 Patrick Vincent N. Lubenia , Eduardo R. Mendoza , Angelyn R. Lao

The incredible thermo-mechanical properties of biological materials arise from the microscopic scale due to a complex hierarchical mechanism, regulated by microinstabilities at the molecular level. The description of such complex structures…

Biological Physics · Physics 2022-10-26 Luca Bellino

Ultra-low-crosslinked (ULC) microgels are among the softest colloidal particles nowadays routinely synthesized experimentally. Despite a growing literature of experimental results, their microscopic behavior under crowded conditions is yet…

Soft Condensed Matter · Physics 2026-04-30 Susana Marín-Aguilar , Emanuela Zaccarelli

The dispersions of nonionic sucrose ester surfactants in water exhibit a highly negative zeta-potential, though its origin remains controversial. The addition of electrolytes to these dispersions may influence their zeta-potential, thus…

Soft Condensed Matter · Physics 2025-05-09 Diana Cholakova , Nevena Pagureva , Monika Hristova , Slavka Tcholakova

There are large number of proteins, the existence of which are known but not their crystal structure, because of difficulty in finding the exact condition for their crystallization. Heterogeneous nucleation on disordered porous substrates…

Biological Physics · Physics 2015-10-19 Anindita Sengupta Ghatak , Animangsu Ghatak

We study theoretically the thermodynamics, over a broad temperature range (5 C to 125 C), related to hydrated water upon protein unfolding. The hydration effect is modeled as interacting dipoles in an external field, mimicking the influence…

Condensed Matter · Physics 2009-11-07 Audun Bakk , Johan S. Hoye , Alex Hansen

Pseudo-binary mixtures of different glycolipids, four different rhamnolipids (RL) and an alkyl polyglucoside (APG), with poly(diallyl-dimethylammonium chloride) (PDADMAC) have been studied in relation to their adsorption onto negatively…