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In this article, I introduce a group-theoretical method to prove positivity of certain linear combinations (with coefficients generally lying in $\mathbb{C}$) of exponential functions under a set of semidefinite linear constraints. The…

Group Theory · Mathematics 2021-12-06 Robert Lin

Systems consisting of few interacting fermions are the building blocks of matter with atoms and nuclei being the most prominent examples. We have created an artificial few-body quantum system with complete control over the system's quantum…

Quantum Gases · Physics 2015-03-17 F. Serwane , G. Zürn , T. Lompe , T. B. Ottenstein , A. N. Wenz , S. Jochim

A new notion of partition-determined functions is introduced, and several basic inequalities are developed for the entropy of such functions of independent random variables, as well as for cardinalities of compound sets obtained using these…

Information Theory · Computer Science 2012-06-05 Mokshay Madiman , Adam Marcus , Prasad Tetali

Machine learning has recently emerged as a powerful tool for generating new molecular and material structures. The success of state-of-the-art models stems from their ability to incorporate physical symmetries, such as translation,…

Machine Learning · Computer Science 2024-05-16 Bingqing Cheng

In the study of reaction networks and the polynomial dynamical systems that they generate, special classes of networks with important properties have been identified. These include reversible, weakly reversible}, and, more recently,…

Dynamical Systems · Mathematics 2020-07-30 David F. Anderson , James D. Brunner , Gheorghe Craciun , Matthew D. Johnston

Composite fermion wavefuctions have been used to describe electrons in a strong magnetic field. We show that the polynomial part of these wavefunctions can be obtained by applying a normal ordered product of suitably defined annihilation…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 V. Ruuska , M. Manninen

We consider the zeta and M\"obius functions of a partial order on integer compositions first studied by Bergeron, Bousquet-M\'elou, and Dulucq. The M\"obius function of this poset was determined by Sagan and Vatter. We prove rationality of…

Combinatorics · Mathematics 2007-05-23 Anders Björner , Bruce E. Sagan

Complex systems of intracellular biochemical reactions have a central role in regulating cell identities and functions. Biochemical reaction systems are typically studied using the language and tools of graph theory. However, graph…

Combinatorics · Mathematics 2021-09-24 Raffaella Mulas , Rubén J. Sánchez-García , Ben D. MacArthur

We introduce a systematic approach to express generating functions for the enumeration of maps on surfaces of high genus in terms of a single generating function relevant to planar surfaces. Central to this work is the comparison of two…

Mathematical Physics · Physics 2023-02-07 Nicholas Ercolani , Joceline Lega , Brandon Tippings

The molecular machinery of life is largely created via self-organisation of individual molecules into functional assemblies. Minimal coarse-grained models, where a whole macromolecule is represented by a small number of particles, can be of…

Biological Physics · Physics 2019-06-25 Anne E. Hafner , Johannes Krausser , Anđela Šarić

We answer a question of Paterson, showing that all block systems for the group generated by the round functions of a key-alternating block cipher are the translates of a linear subspace. Following up remarks of Paterson and Shamir, we…

Group Theory · Mathematics 2007-05-23 A. Caranti , F. Dalla Volta , M. Sala , F. Villani

We give two combinatorial interpretations of the Matrix Ansatz of the PASEP in terms of lattice paths and rook placements. This gives two (mostly) combinatorial proofs of a new enumeration formula for the partition function of the PASEP.…

Combinatorics · Mathematics 2021-01-26 Sylvie Corteel , Matthieu Josuat-Verges , Thomas Prellberg , Martin Rubey

Reaction systems are discrete dynamical systems that model biochemical processes in living cells using finite sets of reactants, inhibitors, and products. We investigate the computational complexity of a comprehensive set of problems…

Computational Complexity · Computer Science 2023-10-31 Rocco Ascone , Giulia Bernardini , Luca Manzoni

Systems biology uses large networks of biochemical reactions to model the functioning of biological cells from the molecular to the cellular scale. The dynamics of dissipative reaction networks with many well separated time scales can be…

Molecular Networks · Quantitative Biology 2013-05-28 Vincent Noel , Dima Grigoriev , Sergei Vakulenko , Ovidiu Radulescu

Recently it has been shown that all non-trivial closed permutation groups containing the automorphism group of the random poset are generated by two types of permutations: the first type are permutations turning the order upside down, and…

Combinatorics · Mathematics 2012-10-24 Péter Pál Pach , Michael Pinsker , András Pongrácz , Csaba Szabó

Backwards analysis, first popularized by Seidel, is often the simplest most elegant way of analyzing a randomized algorithm. It applies to incremental algorithms where elements are added incrementally, following some random permutation,…

Data Structures and Algorithms · Computer Science 2017-04-18 Mathias Bæk Tejs Knudsen , Mikkel Thorup

Reaction networks are widely used models to describe biochemical processes. Stochastic fluctuations in the counts of biological macromolecules have amplified consequences due to their small population sizes. This makes it necessary to favor…

Probability · Mathematics 2022-02-28 Daniele Cappelletti , Badal Joshi

This work introduces a new kind of semigroup of $\N^p$ called proportionally modular affine semigroup. These semigroups are defined by modular Diophantine inequalities and they are a generalization of proportionally modular numerical…

Commutative Algebra · Mathematics 2016-07-12 J. I. García-García , M. A. Moreno-Frías , A. Vigneron-Tenorio

We introduce a new approach to an enumerative problem closely linked with the geometry of branched coverings; that is, we study the number of ways a permutation can be decomposed into a product of a given number of 2-cycles, 3-cycles, etc.…

Combinatorics · Mathematics 2007-05-23 John Irving

Our results can be viewed as applications of algebraic combinatorics in random matrix theory. These applications are motivated by the predictive power of random matrix theory for the statistical behavior of the celebrated Riemann…

Combinatorics · Mathematics 2018-05-21 Helen Riedtmann