English
Related papers

Related papers: Encoding Mechano-Memories in Actin Networks

200 papers

Dense Associative Memories or Modern Hopfield Networks have many appealing properties of associative memory. They can do pattern completion, store a large number of memories, and can be described using a recurrent neural network with a…

Neural and Evolutionary Computing · Computer Science 2021-07-29 Dmitry Krotov

Cell shape changes are vital for many physiological processes such as cell proliferation, cell migration and morphogenesis. They emerge from an orchestrated interplay of active cellular force generation and passive cellular force response -…

Biological Physics · Physics 2020-05-20 Marcel Mokbel , Kamran Hosseini , Sebastian Aland , Elisabeth Fischer-Friedrich

Memory networks are neural networks with an explicit memory component that can be both read and written to by the network. The memory is often addressed in a soft way using a softmax function, making end-to-end training with backpropagation…

Machine Learning · Statistics 2016-05-25 Sarath Chandar , Sungjin Ahn , Hugo Larochelle , Pascal Vincent , Gerald Tesauro , Yoshua Bengio

Autoassociative networks were proposed in the 80's as simplified models of memory function in the brain, using recurrent connectivity with hebbian plasticity to store patterns of neural activity that can be later recalled. This type of…

Disordered Systems and Neural Networks · Physics 2011-11-10 Emilio Kropff , Alessandro Treves

Memory effects are ubiquitous in nature and are particularly relevant at the nanoscale where the dynamical properties of electrons and ions strongly depend on the history of the system, at least within certain time scales. We review here…

Mesoscale and Nanoscale Physics · Physics 2011-03-02 Yuriy V. Pershin , Massimiliano Di Ventra

Living tissues show an extraordinary adaptiveness to strain, which is crucial for their proper biological functioning. The physical origin of this mechanical behaviour has been widely investigated using reconstituted networks of collagen…

Soft Condensed Matter · Physics 2019-02-25 Federica Burla , Justin Tauber , Simone Dussi , Jasper van der Gucht , Gijsje H. Koenderink

The growth of actin filament networks is a fundamental biological process that drives a variety of cellular and intracellular motions. During motility, eukaryotic cells and intracellular pathogens are propelled by actin networks organized…

Biological Physics · Physics 2009-11-13 Joshua W. Shaevitz , Daniel A. Fletcher

We study a reconstituted composite system consisting of an active microtubule network interdigitated with a passive network of entangled F-actin filaments. Increasing viscoelasticity of the F-actin network controls the emergent dynamics,…

Soft Condensed Matter · Physics 2022-02-16 John Berezney , Bruce L. Goode , Seth Fraden , Zvonimir Dogic

We propose a novel reinforcement learning-based approach for adaptive and iterative feature selection. Given a masked vector of input features, a reinforcement learning agent iteratively selects certain features to be unmasked, and uses…

Machine Learning · Computer Science 2020-05-26 Uri Shaham , Tom Zahavy , Cesar Caraballo , Shiwani Mahajan , Daisy Massey , Harlan Krumholz

Thermally-driven semi-crystalline polymer networks are capable to achieve both the one-way shape-memory effect and two-way shape-memory effect under stress and stress-free conditions, therefore representing an appealing class of polymers…

We study the mechanics of nematically ordered semiflexible networks showing that they, like isotropic networks, undergo an affine to non-affine cross-over controlled by the ratio of the filament length to the non-affinity length. Deep in…

Soft Condensed Matter · Physics 2010-02-25 Andrew R. Missel , Mo Bai , William S. Klug , Alex J. Levine

In the framework of a phase field model of a single cell crawling on a substrate, we investigate how the properties of the cell membrane affect the shape and motility of the cell. Since the membrane influences the cell dynamics on multiple…

Soft Condensed Matter · Physics 2016-03-23 Benjamin Winkler , Igor S. Aranson , Falko Ziebert

The increasing number of protein-based metamaterials demands reliable and efficient theoretical and computational methods to study the physicochemical properties they may display. In this regard, we develop a simulation strategy based on…

Soft Condensed Matter · Physics 2020-06-23 J. A. Campos Gonzalez Angulo , G. Wiesehan , R. F. Ribeiro , J. Yuen-Zhou

The mechanisms underlying chemifriction, i.e. the contribution of interfacial bonding to friction in defected twisted graphene interfaces are revealed using fully atomistic machine-learning molecular dynamics simulations. This involves…

Mesoscale and Nanoscale Physics · Physics 2025-03-20 Penghua Ying , Xiang Gao , Amir Natan , Michael Urbakh , Oded Hod

Time perception is essential for task switching, and in the mammalian brain appears alongside other processes. Memristors are electronic components used as synapses and as models for neurons. The d.c. response of memristors can be…

Robotics · Computer Science 2014-02-18 Ella Gale , Ben de Lacy Costello , Andrew Adamatzky

Living tissue is able to withstand large stresses in everyday life, yet it also actively adapts to dynamic loads. This remarkable mechanical behaviour emerges from the interplay between living cells and their non-living extracellular…

Biological Physics · Physics 2022-02-02 Iain Muntz , Michele Fenu , Gerjo J. V. M. van Osch , Gijsje H. Koenderink

The cytoskeleton is a model active matter system that controls diverse cellular processes from division to motility. While both active actomyosin dynamics and actin-microtubule interactions are key to the cytoskeleton's versatility and…

The behavior of an atom in a molecule, liquid or solid is governed by the force it experiences. If the dependence of this vectorial force on the atomic chemical environment can be $learned$ efficiently with high-fidelity from benchmark…

Materials Science · Physics 2015-10-28 Venkatesh Botu , Rampi Ramprasad

Memristive systems, namely resistive systems with memory, are attracting considerable attention due to their ubiquity in several phenomena and technological applications. Here, we show that even the simplest one-dimensional network formed…

Disordered Systems and Neural Networks · Physics 2013-03-01 Y. V. Pershin , V. A. Slipko , M. Di Ventra

Bone is a stiff and though, hierarchical and continuously evolving material that optimizes its structure to respond to mechanical stimuli, which also govern growth and remodeling processes. However, a full understanding of the underlying…

Applied Physics · Physics 2022-06-30 M. Fraldi , A. Cutolo , A. R. Carotenuto , S. Palumbo , F. Bosia , N. M. Pugno