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Accurate segmentation of critical anatomical structures is at the core of medical image analysis. The main bottleneck lies in gathering the requisite expert-labeled image annotations in a scalable manner. Methods that permit to produce…

Computer Vision and Pattern Recognition · Computer Science 2020-07-09 Yuhang Lu , Weijian Li , Kang Zheng , Yirui Wang , Adam P. Harrison , Chihung Lin , Song Wang , Jing Xiao , Le Lu , Chang-Fu Kuo , Shun Miao

The change of retinal vasculature is an early sign of many vascular and systematic diseases, such as diabetes and hypertension. Different behaviors of retinal arterioles and venules form an important metric to measure the disease severity.…

Computer Vision and Pattern Recognition · Computer Science 2018-12-04 Meng Li , Yan Zhang , Haicheng She , Jinqiong Zhou , Jia Jia , Danmei He , Li Zhang

Image recognition tasks that involve identifying parts of an object or the contents of a vessel can be viewed as a hierarchical problem, which can be solved by initial recognition of the main object, followed by recognition of its parts or…

Computer Vision and Pattern Recognition · Computer Science 2017-10-17 Sagi Eppel

One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

Neurons and Cognition · Quantitative Biology 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess

We present a novel graph-theoretic method for small bowel path tracking. It is formulated as finding the minimum cost path between given start and end nodes on a graph that is constructed based on the bowel wall detection. We observed that…

Image and Video Processing · Electrical Eng. & Systems 2022-02-17 Seung Yeon Shin , Sungwon Lee , Ronald M. Summers

Continuously measured arterial blood velocity can provide insight into physiological parameters and potential disease states. The efficient and effective description of the temporal profiles of arterial velocity is crucial for both clinical…

Quantitative Methods · Quantitative Biology 2024-02-16 Justen R Geddes , Amanda Randles

This paper tackles the task of estimating the topology of road networks from aerial images. Building on top of a global model that performs a dense semantical classification of the pixels of the image, we design a Convolutional Neural…

Computer Vision and Pattern Recognition · Computer Science 2018-08-30 Carles Ventura , Jordi Pont-Tuset , Sergi Caelles , Kevis-Kokitsi Maninis , Luc Van Gool

A manual measurement of blood vessels diameter is a conventional component of routine visual assessment of microcirculation, say, during optical capillaroscopy. However, many modern optical methods for blood flow measurements demand the…

Quantitative Methods · Quantitative Biology 2017-04-21 Eugene B. Postnikov , Maria O. Tsoy , Maxim A. Kurochkin , Dmitry E. Postnov

In this paper, we propose a novel learning-based polygonal point set tracking method. Compared to existing video object segmentation~(VOS) methods that propagate pixel-wise object mask information, we propagate a polygonal point set over…

Computer Vision and Pattern Recognition · Computer Science 2021-06-01 Gunhee Nam , Miran Heo , Seoung Wug Oh , Joon-Young Lee , Seon Joo Kim

Cardiac motion tracking from echocardiography can be used to estimate and quantify myocardial motion within a cardiac cycle. It is a cost-efficient and effective approach for assessing myocardial function. However, ultrasound imaging has…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Long Teng , Wei Feng , Menglong Zhu , Xinchao Li

Network tomography is a crucial problem in network monitoring, where the observable path performance metric values are used to infer the unobserved ones, making it essential for tasks such as route selection, fault diagnosis, and traffic…

Machine Learning · Computer Science 2025-02-25 Yuntong Hu , Junxiang Wang , Liang Zhao

Tracking cells in time-lapse videos is an essential technique for monitoring cell population dynamics at a single-cell level. Current methods for cell tracking are developed on videos with mostly single, constant signals and do not detect…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Florian Bürger , Martim Dias Gomes , Nica Gutu , Adrián E. Granada , Noémie Moreau , Katarzyna Bozek

The caliber and configuration of retinal blood vessels serve as important biomarkers for various diseases and medical conditions. A thorough analysis of the retinal vasculature requires the segmentation of the blood vessels and their…

Image and Video Processing · Electrical Eng. & Systems 2025-03-13 José Morano , Guilherme Aresta , Hrvoje Bogunović

Although neural networks are capable of reaching astonishing performances on a wide variety of contexts, properly training networks on complicated tasks requires expertise and can be expensive from a computational perspective. In industrial…

Machine Learning · Statistics 2021-05-11 Théo Lacombe , Yuichi Ike , Mathieu Carriere , Frédéric Chazal , Marc Glisse , Yuhei Umeda

This paper provides theoretical and computational developments in statistical shape analysis of shape graphs, and demonstrates them using analysis of complex data from retinal blood-vessel (RBV) networks. The shape graphs are represented by…

Methodology · Statistics 2022-11-29 Aditi Basu Bal , Xiaoyang Guo , Tom Needham , Anuj Srivastava

Rapid advances in high-throughput technologies have led to considerable interest in analyzing genome-scale data in the context of biological pathways, with the goal of identifying functional systems that are involved in a given phenotype.…

Quantitative Methods · Quantitative Biology 2015-06-01 Rosemary Braun , Sahil Shah

Vascular segmentation represents a crucial clinical task, yet its automation remains challenging. Because of the recent strides in deep learning, vesselness filters, which can significantly aid the learning process, have been overlooked.…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Guillaume Garret , Antoine Vacavant , Carole Frindel

Tracking Any Point (TAP) in a video is a challenging computer vision problem with many demonstrated applications in robotics, video editing, and 3D reconstruction. Existing methods for TAP rely heavily on complex tracking-specific inductive…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Artem Zholus , Carl Doersch , Yi Yang , Skanda Koppula , Viorica Patraucean , Xu Owen He , Ignacio Rocco , Mehdi S. M. Sajjadi , Sarath Chandar , Ross Goroshin

The morphology of retinal blood vessels can indicate various diseases in the human body, and researchers have been working on automatic scanning and segmentation of retinal images to aid diagnosis. This project compares the performance of…

Image and Video Processing · Electrical Eng. & Systems 2023-03-20 Ifeyinwa Linda Anene , Yongmin Li

Vessel segmentation in fundus is a key diagnostic capability in ophthalmology, and there are various challenges remained in this essential task. Early approaches indicate that it is often difficult to obtain desirable segmentation…

Computer Vision and Pattern Recognition · Computer Science 2020-01-17 Shaoming Zheng , Tianyang Zhang , Jiawei Zhuang , Hao Wang , Jiang Liu
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