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Keeping software systems up to date is essential to avoid technical debt, security vulnerabilities, and the rigidity typical of legacy systems. However, updating libraries and frameworks remains a time consuming and error-prone process.…

Software Engineering · Computer Science 2026-01-09 Aylton Almeida , Laerte Xavier , Marco Tulio Valente

Automated scientific discovery with large language models is transforming the research lifecycle from ideation to experimentation, yet existing agents struggle to autonomously process raw data collected from scientific experiments. We…

Artificial Intelligence · Computer Science 2026-04-29 Ke Lin , Yilin Lu , Shreyas Bhat , Xuehang Guo , Junier Oliva , Qingyun Wang

We present a multi-agent system for automation of scientific research tasks, cmbagent (https://github.com/CMBAgents/cmbagent). The system is formed by about 30 Large Language Model (LLM) agents and implements a Planning & Control strategy…

Traditional methods of linking large language models (LLMs) to knowledge bases via the semantic similarity search often fall short of capturing complex relational dynamics. To address these limitations, we introduce AutoKG, a lightweight…

Computation and Language · Computer Science 2023-11-28 Bohan Chen , Andrea L. Bertozzi

To execute scientific computing programs such as deep learning at high speed, GPU acceleration is a powerful option. With the recent advancements in web technologies, interfaces like WebGL and WebGPU, which utilize GPUs on the client side…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Masatoshi Hidaka , Tatsuya Harada

We develop an iterative assistant we call ChatVis that can synthetically generate Python scripts for data analysis and visualization using a large language model (LLM). The assistant allows a user to specify the operations in natural…

Human-Computer Interaction · Computer Science 2024-10-17 Tanwi Mallick , Orcun Yildiz , David Lenz , Tom Peterka

Efficient reproduction of research papers is pivotal to accelerating scientific progress. However, the increasing complexity of proposed methods often renders reproduction a labor-intensive endeavor, necessitating profound domain expertise.…

Artificial Intelligence · Computer Science 2026-04-27 Xuanle Zhao , Zilin Sang , Yuxuan Li , Qi Shi , Weilun Zhao , Shuo Wang , Duzhen Zhang , Xu Han , Zhiyuan Liu , Maosong Sun

Nowadays, engineers have to develop software often without even knowing which hardware it will eventually run on in numerous mobile phones, tablets, desktops, laptops, data centers, supercomputers and cloud services. Unfortunately,…

Software Engineering · Computer Science 2015-06-23 Grigori Fursin , Abdul Memon , Christophe Guillon , Anton Lokhmotov

The Lean mathematical library Mathlib is one of the fastest-growing libraries of formalised mathematics. We describe various strategies to manage this growth, while allowing for change and avoiding maintainer overload. This includes dealing…

Programming Languages · Computer Science 2025-10-08 Anne Baanen , Matthew Robert Ballard , Johan Commelin , Bryan Gin-ge Chen , Michael Rothgang , Damiano Testa

Python is a popular programming language known for its flexibility, usability, readability, and focus on developer productivity. The quantum software community has adopted Python on a number of large-scale efforts due to these…

Quantum Physics · Physics 2021-05-12 Thien Nguyen , Alexander J. McCaskey

Library migration is a common but error-prone task in software development. Developers may need to replace one library with another due to reasons like changing requirements or licensing changes. Migration typically entails updating and…

Software Engineering · Computer Science 2026-02-03 Daniel Ramos , Catarina Gamboa , Inês Lynce , Vasco Manquinho , Ruben Martins , Claire Le Goues

The rapid growth of research literature, particularly in large language models (LLMs), has made producing comprehensive and current survey papers increasingly difficult. This paper introduces autosurvey2, a multi-stage pipeline that…

Artificial Intelligence · Computer Science 2025-12-03 Siyi Wu , Chiaxin Liang , Ziqian Bi , Leyi Zhao , Tianyang Wang , Junhao Song , Yichao Zhang , Keyu Chen , Benji Peng , Xinyuan Song

Models can be built directly from input and output data trough a process known as system identification. The Nonlinear AutoRegressive with eXogenous inputs (NARMAX) models are among the most used mathematical representations in the area and…

Systems and Control · Electrical Eng. & Systems 2022-11-11 Henrique Carvalho de Castro , Bruno Henrique Groenner Barbosa

Among the programming languages for Programmable Logic Controllers (PLCs), Structured Text (ST) is widely adopted for industrial automation due to its expressiveness and flexibility. However, major vendors implement ST with proprietary…

Software Engineering · Computer Science 2025-08-05 Donghao Yang , Aolang Wu , Tianyi Zhang , Li Zhang , Fang Liu , Xiaoli Lian , Yuming Ren , Jiaji Tian , Xiaoyin Che

A common way of assessing language learners' mastery of vocabulary is via multiple-choice cloze (i.e., fill-in-the-blank) questions. But the creation of test items can be laborious for individual teachers or in large-scale language…

Computation and Language · Computer Science 2024-03-05 Qiao Wang , Ralph Rose , Naho Orita , Ayaka Sugawara

Hybrid-Lambda is a software package that simulates gene trees under Kingman or two Lambda-coalescent processes within species networks or species trees. It is written in C++, and re- leased under GNU General Public License (GPL) version 3.…

Populations and Evolution · Quantitative Biology 2013-03-05 Sha Zhu , James H Degnan , Bjarki Eldon

Large pre-trained language models such as GPT-3, Codex, and Google's language model are now capable of generating code from natural language specifications of programmer intent. We view these developments with a mixture of optimism and…

Software Engineering · Computer Science 2021-12-07 Naman Jain , Skanda Vaidyanath , Arun Iyer , Nagarajan Natarajan , Suresh Parthasarathy , Sriram Rajamani , Rahul Sharma

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

OrbWeaver, an automatic knowledge extraction system paired with a human interface, streamlines the use of unintuitive natural language processing software for modeling systems from their documentation. OrbWeaver enables the indirect…

Human-Computer Interaction · Computer Science 2021-04-12 Steve Schmidt , Denley Lam , Patrick Hayden

Large Language Model (LLM) agents have shown great potential in addressing real-world data science problems. LLM-driven data science agents promise to automate the entire machine learning pipeline, yet their real-world effectiveness remains…

Computation and Language · Computer Science 2025-10-09 Yixin Ou , Yujie Luo , Jingsheng Zheng , Lanning Wei , Zhuoyun Yu , Shuofei Qiao , Jintian Zhang , Da Zheng , Yuren Mao , Yunjun Gao , Huajun Chen , Ningyu Zhang
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