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We initiate the study of sub-linear sketching and streaming techniques for estimating the output size of common dictionary compressors such as Lempel-Ziv '77, the run-length Burrows-Wheeler transform, and grammar compression. To this end,…

Data Structures and Algorithms · Computer Science 2024-08-20 Ruben Becker , Matteo Canton , Davide Cenzato , Sung-Hwan Kim , Bojana Kodric , Nicola Prezza

We show how to build several data structures of central importance to string processing, taking as input the Burrows-Wheeler transform (BWT) and using small extra working space. Let $n$ be the text length and $\sigma$ be the alphabet size.…

Data Structures and Algorithms · Computer Science 2019-08-14 Nicola Prezza , Giovanna Rosone

The recently proposed Conformer architecture has shown state-of-the-art performances in Automatic Speech Recognition by combining convolution with attention to model both local and global dependencies. In this paper, we study how to reduce…

Audio and Speech Processing · Electrical Eng. & Systems 2021-09-09 Maxime Burchi , Valentin Vielzeuf

Following (Kolpakov et al., 2013; Gawrychowski and Manea, 2015), we continue the study of {\em $\alpha$-gapped repeats} in strings, defined as factors $uvu$ with $|uv|\leq \alpha |u|$. Our main result is the $O(\alpha n)$ bound on the…

Formal Languages and Automata Theory · Computer Science 2015-10-05 Maxime Crochemore , Roman Kolpakov , Gregory Kucherov

Temporal graphs represent binary relationships that change along time. They can model the dynamism of, for example, social and communication networks. Temporal graphs are defined as sets of contacts that are edges tagged with the temporal…

Data Structures and Algorithms · Computer Science 2019-01-01 Nieves R. Brisaboa , Diego Caro , Antonio Fariña , M. Andrea Rodriguez

We study fully dynamic algorithms for maximum matching. This is a well-studied problem, known to admit several update-time/approximation trade-offs. For instance, it is known how to maintain a 1/2-approximate matching in $\log^{O(1)} n$…

Data Structures and Algorithms · Computer Science 2022-11-15 Soheil Behnezhad

Word Break is a prototypical factorization problem in string processing: Given a word $w$ of length $N$ and a dictionary $\mathcal{D} = \{d_1, d_2, \ldots, d_{K}\}$ of $K$ strings, determine whether we can partition $w$ into words from…

Data Structures and Algorithms · Computer Science 2025-06-19 Rajat De , Dominik Kempa

In previous work we studied a new type of DCGs, Datalog grammars, which are inspired on database theory. Their efficiency was shown to be better than that of their DCG counterparts under (terminating) OLDT-resolution. In this article we…

cmp-lg · Computer Science 2008-02-03 Veronica Dahl , Paul Tarau , Lidia Moreno , Manolo Palomar

The Suffix Array is a classic text index enabling on-line pattern matching queries via simple binary search. The main drawback of the Suffix Array is that it takes linear space in the text's length, even if the text itself is extremely…

Data Structures and Algorithms · Computer Science 2025-03-19 Davide Cenzato , Lore Depuydt , Travis Gagie , Sung-Hwan Kim , Giovanni Manzini , Francisco Olivares , Nicola Prezza

A simple linear-time algorithm for constructing a linear context-free tree grammar of size O(rg + r g log (n/r g))for a given input tree T of size n is presented, where g is the size of a minimal linear context-free tree grammar for T, and…

Data Structures and Algorithms · Computer Science 2018-10-09 Artur Jeż , Markus Lohrey

We present a constituency parsing algorithm that, like a supertagger, works by assigning labels to each word in a sentence. In order to maximally leverage current neural architectures, the model scores each word's tags in parallel, with…

Computation and Language · Computer Science 2020-06-30 Nikita Kitaev , Dan Klein

We consider the problem of indexing a string $t$ of length $n$ to report the occurrences of a query pattern $p$ containing $m$ characters and $j$ wildcards. Let $occ$ be the number of occurrences of $p$ in $t$, and $\sigma$ the size of the…

Data Structures and Algorithms · Computer Science 2012-09-07 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , Søren Vind

We describe a data structure that supports access, rank and select queries, as well as symbol insertions and deletions, on a string $S[1,n]$ over alphabet $[1..\sigma]$ in time $O(\lg n/\lg\lg n)$, which is optimal even on binary sequences…

Data Structures and Algorithms · Computer Science 2013-02-04 Gonzalo Navarro , Yakov Nekrich

We study a document retrieval problem in the new framework where $D$ text documents are organized in a {\em category tree} with a pre-defined number $h$ of categories. This situation occurs e.g. with taxomonic trees in biology or subject…

Data Structures and Algorithms · Computer Science 2020-06-03 Djamal Belazzougui , Gregory Kucherov

Practical data structures for the edit-sensitive parsing (ESP) are proposed. Given a string S, its ESP tree is equivalent to a context-free grammar G generating just S, which is represented by a DAG. Using the succinct data structures for…

Data Structures and Algorithms · Computer Science 2015-03-17 Naoya Kishiue , Masaya Nakahara , Shirou Maruyama , Hiroshi Sakamoto

Although several grammar-based self-indexes have been proposed thus far, their applicability is limited to offline settings where whole input texts are prepared, thus requiring to rebuild index structures for given additional inputs, which…

Data Structures and Algorithms · Computer Science 2015-07-07 Yoshimasa Takabatake , Yasuo Tabei , Hiroshi Sakamoto

We first review how we can store a run-length compressed suffix array (RLCSA) for a text $T$ of length $n$ over an alphabet of size $\sigma$ whose Burrows-Wheeler Transform (BWT) consists of $r$ runs in $O \left( \rule{0ex}{2ex} r \log (n /…

Data Structures and Algorithms · Computer Science 2025-04-22 Nathaniel K. Brown , Travis Gagie , Giovanni Manzini , Gonzalo Navarro , Marinella Sciortino

Word-representable graphs are a subset of graphs that may be represented by a word $w$ over an alphabet composed of the vertices in the graph. In such graphs, an edge exists if and only if the occurrences of the corresponding vertices…

Data Structures and Algorithms · Computer Science 2025-02-12 Duncan Adamson

The acoustic-to-word model based on the Connectionist Temporal Classification (CTC) criterion is a natural end-to-end (E2E) system directly targeting word as output unit. Two issues exist in the system: first, the current output of the CTC…

Computation and Language · Computer Science 2019-09-06 Amit Das , Jinyu Li , Guoli Ye , Rui Zhao , Yifan Gong

Given a set of finite words, the Overlap Graph (OG) is a complete weighted digraph where each word is a node and where the weight of an arc equals the length of the longest overlap of one word onto the other (Overlap is an asymmetric…

Data Structures and Algorithms · Computer Science 2021-11-18 Bastien Cazaux , Eric Rivals
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