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A variety of electrostatic phenomena, including the structure of electric double layers and the aggregation of charged colloids and proteins, are affected by nonuniform electric permittivity. These effects are frequently ignored in…

Soft Condensed Matter · Physics 2018-10-17 Huanxin Wu , Erik Luijten

Understanding protein flexibility and its dynamic interactions with other molecules is essential for studying protein function. Although cryogenic electron microscopy(cryo-EM) provides an opportunity to observe macromolecular dynamics…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Bintao He , Yiran Cheng , Hongjia Li , Xiang Gao , Xin Gao , Fa Zhang , Renmin Han

Twisted bilayer systems host a wealth of emergent phenomena, such as flat-band superconductivity, ferromagnetism, and ferroelectricity, arising from moir\'e superlattices and unconventional interlayer coupling. Despite their central role,…

Mesoscale and Nanoscale Physics · Physics 2026-01-21 A. Nakamura , Y. Chiashi , T. Shimojima , Y. Tanaka , S. Akatsuka , M. Sakano , S. Masubuchi , T. Machida , K. Watanabe , T. Taniguchi , K. Ishizaka

Cryo-electron microscopy (cryo-EM) is capable of producing reconstructed 3D images of biomolecules at near-atomic resolution. As such, it represents one of the most promising imaging techniques in structural biology. However, raw cryo-EM…

Quantitative Methods · Quantitative Biology 2021-05-25 Nina Miolane , Frédéric Poitevin , Yee-Ting Li , Susan Holmes

This paper studies the problem of reconstructing binary matrices that are only accessible through few evaluations of their discrete X-rays. Such question is prominently motivated by the demand in material science for developing a tool for…

Combinatorics · Mathematics 2007-05-23 Alberto Del Lungo , Andrea Frosini , Maurice Nivat , Laurent Vuillon

Ptychography has become prominent at synchrotron facilities worldwide for characterizing biological and material specimens' topological structures and properties at the nanometer or atomic scale, due to its lens - less, highly quantitative…

Image and Video Processing · Electrical Eng. & Systems 2025-01-28 Tao Liu , Bingyang Wang , JiangTao Zhao , Maik Kahnt , Fucai Zhang

Ptychography is a computational imaging technique that aims to reconstruct the object of interest from a set of diffraction patterns. Each of these is obtained by a localized illumination of the object, which is shifted after each…

Image and Video Processing · Electrical Eng. & Systems 2024-02-26 Oleh Melnyk , Patricia Römer

We directly visualize a two-dimensional anisotropic Wigner crystal and its quantum melting in monolayer 1T-ReSe2 using non-invasive scanning tunnelling microscopy. In crystals with anisotropic effective mass, an electron's quantum…

With full knowledge of a material's atomistic structure, it is possible to predict any macroscopic property of interest. In practice, this is hindered by limitations of the chosen characterisation techniques. For example, electron…

We propose a new method to overcome the nodal plane problem for the tomographic reconstruction of molecular orbitals with twofold mirror antisymmetry in the length form based on high-order harmonic generation. It is shown that, by carrying…

Chemical Physics · Physics 2013-04-30 Xiaosong Zhu , Meiyan Qin , Yang Li , Qingbin Zhang , Zhizhan Xu , Peixiang Lu

We consider a perfectly homogeneous, isotropic and spatially flat universe which undergoes a sudden phase transition producing topological defects. We assume that these defects form a coherent network which scales like the background…

Astrophysics · Physics 2007-05-23 Jean-Philippe Uzan , Nathalie Deruelle , Alain Riazuelo

We introduce a computational method to discover polymorphs in molecular crystals at finite temperature. The method is based on reproducing the crystallization process starting from the liquid and letting the system discover the relevant…

Chemical Physics · Physics 2020-04-10 Pablo M. Piaggi , Michele Parrinello

Vertically stacked atomic layers from different layered crystals can be held together by van der Waals forces, which can be used for building novel heterostructures, offering a platform for developing a new generation of atomically thin,…

Textures in images can often be well modeled using self-similar processes while they may at the same time display anisotropy. The present contribution thus aims at studying jointly selfsimilarity and anisotropy by focusing on a specific…

Data Analysis, Statistics and Probability · Physics 2015-06-16 S. G. Roux , M. Clausel , B. Vedel , S. Jaffard , P. Abry

We address the problem of reconstructing X-Ray tomographic images from scarce measurements by interpolating missing acquisitions using a self-supervised approach. To do so, we train shallow neural networks to combine two neighbouring…

Image and Video Processing · Electrical Eng. & Systems 2022-05-18 Emilien Valat , Katayoun Farrahi , Thomas Blumensath

Controlling the spectral and polarization responses of two-dimensional (2D) crystals is vital for developing ultra-thin platforms for compact optoelectronic devices. However, independently tuning optical anisotropy and spectral response…

Mesoscale and Nanoscale Physics · Physics 2025-02-04 Tomojit Chowdhury , Fauzia Mujid , Zehra Naqvi , Ariana Ray , Ce Liang , David A. Muller , Nathan P. Guisinger , Jiwoong Park

Modern imaging techniques at the molecular scale rely on utilizing novel coherent light sources like X-ray free electron lasers for the ultimate goal of visualizing such objects as individual biomolecules rather than crystals. Here, unlike…

We propose algorithms based on an optimisation method for inverse multislice ptychography in, e.g. electron microscopy. The multislice method is widely used to model the interaction between relativistic electrons and thick specimens. Since…

Unlabeled shape analysis is a rapidly emerging and challenging area of statistics. This has been driven by various novel applications in bioinformatics. We consider here the situation where two configurations are matched under various…

Applications · Statistics 2012-09-28 Kanti V. Mardia , Emma M. Petty , Charles C. Taylor

We demonstrate a novel approach to the reconstruction of scanning probe x-ray diffraction tomography data with anisotropic poly crystalline samples. The method involves reconstructing a voxel map containing an orientation distribution…