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Recent years have seen a lot of progress in algorithms for learning parameters of spreading dynamics from both full and partial data. Some of the remaining challenges include model selection under the scenarios of unknown network structure,…

Social and Information Networks · Computer Science 2024-01-02 Mateusz Wilinski , Andrey Y. Lokhov

Cells receive signaling molecules by receptors and relay information via sensory networks so that they can respond properly depending on the type of signal. Recent studies have shown that cells can extract multi-dimensional information from…

Biological Physics · Physics 2018-02-14 Yoshihiko Hasegawa

In this paper, we present a framework for distributively optimizing the transmission strategies of secondary users in an ad hoc cognitive radio network. In particular, the proposed approach allows secondary users to set their transmit…

Networking and Internet Architecture · Computer Science 2016-02-05 Orestis Georgiou , Mohammud Z. Bocus , Shanshan Wang

In this paper, we propose a semantic communication approach based on probabilistic graphical model (PGM). The proposed approach involves constructing a PGM from a training dataset, which is then shared as common knowledge between the…

Machine Learning · Computer Science 2024-08-09 Haowen Wan , Qianqian Yang , Jiancheng Tang , Zhiguo shi

We consider representation learning of 3D molecular graphs in which each atom is associated with a spatial position in 3D. This is an under-explored area of research, and a principled message passing framework is currently lacking. In this…

Machine Learning · Computer Science 2022-11-28 Yi Liu , Limei Wang , Meng Liu , Xuan Zhang , Bora Oztekin , Shuiwang Ji

Evaluating accessible conformational space is computationally expensive and thermal motions are partly neglected in computer models of molecular interactions. This produces error into the estimates of binding strength. We introduce a method…

Quantitative Methods · Quantitative Biology 2016-12-13 Riku Hakulinen , Santeri Puranen

To understand the spatial deployment of base stations (BSs) is the first step to analyze the performance of cellular networks and further design efficient networking protocols. Poisson point process (PPP), which has been widely adopted to…

Information Theory · Computer Science 2018-11-20 Rongpeng Li , Zhifeng Zhao , Yi Zhong , Chen Qi , Honggang Zhang

In diffusion-based molecular communications, messages can be conveyed via the variation in the concentration of molecules in the medium. In this paper, we intend to analyze the achievable capacity in transmission of information from one…

Information Theory · Computer Science 2011-05-11 Arash Einolghozati , Mohsen Sardari , Ahmad Beirami , Faramarz Fekri

Molecular communication is an emerging paradigm for systems that rely on the release of molecules as information carriers. Communication via molecular diffusion is a popular strategy that is ubiquitous in nature and very fast over distances…

Emerging Technologies · Computer Science 2016-09-13 Adam Noel , Dimitrios Makrakis , Abdelhakim Hafid

The accurate and low-cost localization of sensors using a wireless sensor network is critically required in a wide range of today's applications. We propose a novel, robust maximum likelihood-type method for distributed cooperative received…

Signal Processing · Electrical Eng. & Systems 2018-12-12 Luca Carlino , Di Jin , Michael Muma , Abdelhak M. Zoubir

In this work, receiver diversity in advection-dominated diffusion-advection channels is investigated. Strong directed flow fundamentally alters the communication-theoretic properties of molecular communication systems (MC). Specifically,…

Signal Processing · Electrical Eng. & Systems 2026-02-02 Fatih Merdan , Ozgur B. Akan

Molecular dynamics (MD) simulations are powerful tools for elucidating the macroscopic physical properties of materials from microscopic atomic behaviors. However, the massive, high-dimensional datasets generated by MD simulations pose a…

Applications · Statistics 2026-03-19 Yusuke Ono , Takumi Sato , Kenji Yasuoka , Linyu Peng

Quantitatively predictive models of biomolecular circuits are important tools for the design of synthetic biology and molecular communication circuits. The information content of typical time-lapse single-cell data for the inference of…

Molecular Networks · Quantitative Biology 2021-01-11 Tim Prangemeier , Christian Wildner , Maleen Hanst , Heinz Koeppl

In molecular communications, the direct detection of signaling molecules may be challenging due to a lack of suitable sensors and interference in the environment. Motivated by research in molecular biology, we investigate an indirect…

Information Theory · Computer Science 2022-04-25 Trang Ngoc Cao , Vahid Jamali , Wayan Wicke , Phee Lep Yeoh , Nikola Zlatanov , Jamie S Evans , Robert Schober

There have been a bulk of analytic results about the performance of cellular networks where base stations are regularly located on a hexagonal or square lattice. This regular model cannot reflect the reality, and tends to overestimate the…

Networking and Internet Architecture · Computer Science 2015-03-19 Seung Min Yu , Seong-Lyun Kim

With the rise of service-oriented computing, applications are more and more based on coordination of autonomous services. Envisioned over largely distributed and highly dynamic platforms, expressing this coordination calls for alternative…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-15 Marin Bertier , Marko Obrovac , Cédric Tedeschi

We develop a unified framework for distributed inference, semantic communication, and exploration in spatial networks by integrating stochastic geometry with information geometry - a direction that has not been explored in prior literature.…

Information Theory · Computer Science 2025-08-26 Gourab Ghatak

We consider parameter estimation in distributed networks, where each sensor in the network observes an independent sample from an underlying distribution and has $k$ bits to communicate its sample to a centralized processor which computes…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-23 Yanjun Han , Ayfer Özgür , Tsachy Weissman

In this letter, we propose a new molecular modulation scheme for nanonetworks. To evaluate the scheme we introduce a more realistic system model for molecule dissemination and propagation processes based on the Poisson distribution. We…

Information Theory · Computer Science 2012-09-26 Hamidreza Arjmandi , Amin Gohari , Masoume Nasiri Kenari , Farshid Bateni

We consider molecular communication, with information conveyed in the time of release of molecules. The main contribution of this paper is the development of a theoretical foundation for such a communication system. Specifically, we develop…

Information Theory · Computer Science 2016-11-17 K. V. Srinivas , Raviraj S. Adve , Andrew W. Eckford
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