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Density Functional Theory calculations traditionally suffer from an inherent cubic scaling with respect to the size of the system, making big calculations extremely expensive. This cubic scaling can be avoided by the use of so-called linear…

Tensor accelerators have gained popularity because they provide a cheap and efficient solution for speeding up computational-expensive tasks in Deep Learning and, more recently, in other Scientific Computing applications. However, since…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-15 Paolo Sylos Labini , Massimo Bernaschi , Francesco Silvestri , Flavio Vella

We propose a platform-independent multi-threaded function library that provides data structures to generate, differentiate and render both the ordinary basis and the normalized B-basis of a user-specified extended Chebyshev (EC) space that…

Mathematical Software · Computer Science 2018-10-16 Ágoston Róth

Logarithms of determinants of large positive definite matrices appear ubiquitously in machine learning applications including Gaussian graphical and Gaussian process models, partition functions of discrete graphical models, minimum-volume…

Data Structures and Algorithms · Computer Science 2015-03-24 Insu Han , Dmitry Malioutov , Jinwoo Shin

Recently, a class of algorithms combining classical fixed point iterations with repeated random sparsification of approximate solution vectors has been successfully applied to eigenproblems with matrices as large as $10^{108} \times…

Numerical Analysis · Mathematics 2025-04-28 Jonathan Weare , Robert J. Webber

The problem of minimizing a polynomial over a set of polynomial inequalities is an NP-hard non-convex problem. Thanks to powerful results from real algebraic geometry, one can convert this problem into a nested sequence of…

Optimization and Control · Mathematics 2022-08-26 Victor Magron , Jie Wang

Sparse computations frequently appear in scientific simulations and the performance of these simulations rely heavily on the optimization of the sparse codes. The compact data structures and irregular computation patterns in sparse matrix…

Programming Languages · Computer Science 2021-12-10 Zachary Cetinic , Kazem Cheshmi , Maryam Mehri Dehnavi

When implementing functionality which requires sparse matrices, there are numerous storage formats to choose from, each with advantages and disadvantages. To achieve good performance, several formats may need to be used in one program,…

Mathematical Software · Computer Science 2019-10-22 Conrad Sanderson , Ryan Curtin

Sparse tensors are prevalent in many data-intensive applications, yet existing differentiable programming frameworks are tailored towards dense tensors. This presents a significant challenge for efficiently computing gradients through…

Programming Languages · Computer Science 2023-03-14 Amir Shaikhha , Mathieu Huot , Shideh Hashemian

In deep learning inference, model parameters are pruned and quantized to reduce the model size. Compression methods and common subexpression (CSE) elimination algorithms are applied on sparse constant matrices to deploy the models on…

Machine Learning · Computer Science 2023-03-29 Emre Bilgili , Arda Yurdakul

The inversion of structured sparse matrices is a key but computationally and memory-intensive operation in many scientific applications. There are cases, however, where only particular entries of the full inverse are required. This has…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-25 Vincent Maillou , Lisa Gaedke-Merzhaeuser , Alexandros Nikolaos Ziogas , Olaf Schenk , Mathieu Luisier

An efficient and robust linear scaling method is presented for large scale {\it ab initio} electronic structure calculations of a wide variety of materials including metals. The detailed short range and the effective long range…

Other Condensed Matter · Physics 2016-08-31 Taisuke Ozaki

More competent learning models are demanded for data processing due to increasingly greater amounts of data available in applications. Data that we encounter often have certain embedded sparsity structures. That is, if they are represented…

Numerical Analysis · Mathematics 2022-07-28 Yuesheng Xu , Taishan Zeng

We present a method to perform fully selfconsistent density-functional calculations, which scales linearly with the system size and which is well suited for very large systems. It uses strictly localized pseudoatomic orbitals as basis…

Condensed Matter · Physics 2009-10-28 Pablo Ordejon , Emilio Artacho , Jose M. Soler

The performance of sparse matrix computation highly depends on the matching of the matrix format with the underlying structure of the data being computed on. Different sparse matrix formats are suitable for different structures of data.…

Numerical Analysis · Mathematics 2023-09-07 Khaled Abdelaal , Richard Veras

Sparse matrix-matrix multiplication (SpGEMM) is a critical operation in numerous fields, including scientific computing, graph analytics, and deep learning. These applications exploit the sparsity of matrices to reduce storage and…

Machine Learning · Computer Science 2024-08-30 Sanjali Yadav , Bahar Asgari

Density Functional Theory (DFT) has become the quasi-standard for ab-initio simulations for a wide range of applications. While the intrinsic cubic scaling of DFT was for a long time limiting the accessible system size to some hundred…

Materials Science · Physics 2018-02-23 Stephan Mohr , Marc Eixarch , Maximilian Amsler , Mervi J. Mantsinen , Luigi Genovese

In this paper we present a practical solution with performance guarantees to the problem of dimensionality reduction for very large scale sparse matrices. We show applications of our approach to computing the low rank approximation (reduced…

Data Structures and Algorithms · Computer Science 2015-03-06 Dan Feldman , Mikhail Volkov , Daniela Rus

While quantum algorithms for solving large scale systems of linear equations offer potentially exponential speedups, their application has largely been confined to sparse matrices. This work extends the scope of these algorithms to a broad…

Quantum Physics · Physics 2026-02-27 Kun Tang , Jun Lai

We describe a scheme for efficient large-scale electronic-structure calculations based on the combination of the pole expansion and selected inversion (PEXSI) technique with the SIESTA method, which uses numerical atomic orbitals within the…

Computational Physics · Physics 2015-06-19 Lin Lin , Alberto García , Georg Huhs , Chao Yang