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We propose a sparse algebra for samplet compressed kernel matrices, to enable efficient scattered data analysis. We show the compression of kernel matrices by means of samplets produces optimally sparse matrices in a certain S-format. It…

Numerical Analysis · Mathematics 2023-05-05 H. Harbrecht , M. Multerer , O. Schenk , Ch. Schwab

We present a comprehensive framework for structured sparse coding and modeling extending the recent ideas of using learnable fast regressors to approximate exact sparse codes. For this purpose, we develop a novel block-coordinate proximal…

Machine Learning · Computer Science 2012-06-22 Alex Bronstein , Pablo Sprechmann , Guillermo Sapiro

The Julia library TSSOS aims at helping polynomial optimizers to solve large-scale problems with sparse input data. The underlying algorithmic framework is based on exploiting correlative and term sparsity to obtain a new moment-SOS…

Optimization and Control · Mathematics 2021-03-02 Victor Magron , Jie Wang

Matrix-matrix multiplication is a basic operation in linear algebra and an essential building block for a wide range of algorithms in various scientific fields. Theory and implementation for the dense, square matrix case are well-developed.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-01 Alfio Lazzaro , Joost VandeVondele , Juerg Hutter , Ole Schuett

Sparse matrices are the key ingredients of several application domains, from scientific computation to machine learning. The primary challenge with sparse matrices has been efficiently storing and transferring data, for which many sparse…

Hardware Architecture · Computer Science 2023-05-12 Bahar Asgari , Ramyad Hadidi , Joshua Dierberger , Charlotte Steinichen , Amaan Marfatia , Hyesoon Kim

Despite the importance of sparse matrices in numerous fields of science, software implementations remain difficult to use for non-expert users, generally requiring the understanding of underlying details of the chosen sparse matrix storage…

Mathematical Software · Computer Science 2019-07-23 Conrad Sanderson , Ryan Curtin

Broadly speaking, the calculation of core spectra such as electron energy loss spectra (EELS) at the level of density functional theory (DFT) usually relies one of two approaches: conceptually more complex but computationally efficient…

Network embedding has numerous practical applications and has received extensive attention in graph learning, which aims at mapping vertices into a low-dimensional and continuous dense vector space by preserving the underlying structural…

Machine Learning · Computer Science 2024-08-07 Longlong Lin , Yunfeng Yu , Zihao Wang , Zeli Wang , Yuying Zhao , Jin Zhao , Tao Jia

This is the first of two papers to describe a matrix sparsification algorithm that takes a general real or complex matrix as input and produces a sparse output matrix of the same size. The non-zero entries in the output are chosen to…

Numerical Analysis · Mathematics 2013-04-29 Chetan Jhurani

A linear scale method for calculating electronic properties of large and complex systems is introduced within a local density approximation. The method is based on the Chebyshev polynomial expansion and the time-dependent method, which is…

Mesoscale and Nanoscale Physics · Physics 2009-11-13 Shintaro Nomura , Toshiaki Iitaka

Gr{\"o}bner bases is one the most powerful tools in algorithmic non-linear algebra. Their computation is an intrinsically hard problem with a complexity at least single exponential in the number of variables. However, in most of the cases,…

Symbolic Computation · Computer Science 2019-02-04 Matías Bender , Jean-Charles Faugère , Elias Tsigaridas

We propose a novel algorithm for efficiently computing a sparse directed adjacency matrix from a group of time series following a causal graph process. Our solution is scalable for both dense and sparse graphs and automatically selects the…

Machine Learning · Statistics 2019-11-19 Théophile Griveau-Billion , Ben Calderhead

Linear scaling density functional theory approaches to electronic structure are often based on the tendency of electrons to localize even in large atomic and molecular systems. However, in many cases of actual interest, for example in…

Chemical Physics · Physics 2022-03-25 Marcel David Fabian , Ben Shpiro , Roi Baer

Accurate calculations of the spectral density in a strongly correlated quantum many-body system are of fundamental importance to study its dynamics in the linear response regime. Typical examples are the calculation of inclusive and…

Nuclear Theory · Physics 2022-06-15 Joanna E. Sobczyk , Alessandro Roggero

Quasi-separable matrices are a class of rank-structured matriceswidely used in numerical linear algebra and of growing interestin computer algebra, with applications in e.g. the linearization ofpolynomial matrices. Various representation…

Symbolic Computation · Computer Science 2023-02-10 Clément Pernet , Hippolyte Signargout , Gilles Villard

Accelerators for sparse matrix multiplication are important components in emerging systems. In this paper, we study the main challenges of accelerating Sparse Matrix Multiplication (SpMM). For the situations that data is not stored in the…

Hardware Architecture · Computer Science 2019-06-04 Pareesa Ameneh Golnari , Sharad Malik

Neural network models are widely used in solving many challenging problems, such as computer vision, personalized recommendation, and natural language processing. Those models are very computationally intensive and reach the hardware limit…

Machine Learning · Computer Science 2020-04-28 Fei Sun , Minghai Qin , Tianyun Zhang , Liu Liu , Yen-Kuang Chen , Yuan Xie

Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scientific computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-10 Mehmet Deveci , Christian Trott , Sivasankaran Rajamanickam

Network pruning can reduce the high computation cost of deep neural network (DNN) models. However, to maintain their accuracies, sparse models often carry randomly-distributed weights, leading to irregular computations. Consequently, sparse…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-01 Cong Guo , Bo Yang Hsueh , Jingwen Leng , Yuxian Qiu , Yue Guan , Zehuan Wang , Xiaoying Jia , Xipeng Li , Minyi Guo , Yuhao Zhu

Efficient solutions of large-scale, ill-conditioned and indefinite algebraic equations are ubiquitously needed in numerous computational fields, including multiphysics simulations, machine learning, and data science. Because of their…

Mathematical Software · Computer Science 2026-05-25 Xiaoye Sherry Li , Yang Liu
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