Related papers: Treewidth distance on phylogenetic trees

Sparse structures are frequently sought when pursuing tractability in optimization problems. They are exploited from both theoretical and computational perspectives to handle complex problems that become manageable when sparsity is present.…

The Pathwidth Theorem states that if a class of graphs has unbounded pathwidth, then it contains all trees as graph minors. We prove a similar result for dense graphs. More precisely, we give a finite family of tree-like patterns and prove…

Treewidth is a graph parameter of fundamental importance to algorithmic and structural graph theory. This paper surveys several graph parameters tied to treewidth, including separation number, tangle number, well-linked number and Cartesian…

Treewidth is a well-known graph invariant with multiple interesting applications in combinatorics. On the practical side, many NP-complete problems are polynomial-time (sometimes even linear-time) solvable on graphs of bounded treewidth. On…

Treewidth is an important structural graph parameter that quantifies how closely a graph resembles a tree-like structure. It has applications in many algorithmic and combinatorial problems. In this paper, we study the treewidth of outer…

We give a constructive proof of the fact that the treewidth of a graph $G$ is bounded by a linear function of the separation number of $G$.

There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…

Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf…

A resolving set $S$ of a graph $G$ is a subset of its vertices such that no two vertices of $G$ have the same distance vector to $S$. The Metric Dimension problem asks for a resolving set of minimum size, and in its decision form, a…

We provide a finite equational presentation of graphs of treewidth at most three, solving an instanceof an open problem by Courcelle and Engelfriet. We use a syntax generalising series-parallel expressions, denoting graphs with a small…

We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…

The treewidth boundedness problem for a logic asks for the existence of an upper bound on the treewidth of the models of a given formula in that logic. This problem is found to be undecidable for first order logic. We consider a…

We develop a framework for applying treewidth-based dynamic programming on graphs with "hybrid structure", i.e., with parts that may not have small treewidth but instead possess other structural properties. Informally, this is achieved by…

Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…

Many hard graph problems can be solved efficiently when restricted to graphs of bounded treewidth, and more generally to graphs of bounded clique-width. But there is a price to be paid for this generality, exemplified by the four problems…

We investigate parameterized algorithms for computing the average-tree phylogenetic diversity (APD) in rooted phylogenetic networks, studying the problem under different structural parameters that capture the deviation of a network from a…

In 2020, we initiated a systematic study of graph classes in which the treewidth can only be large due to the presence of a large clique, which we call $(\mathrm{tw},\omega)$-bounded. While $(\mathrm{tw},\omega)$-bounded graph classes are…

Graphs with bounded treewidth and bounded maximum degree are known to have tree-partitions of bounded width. What can be said if the bounded treewidth assumption is strengthened to bounded pathwidth? We prove that every graph with bounded…

In this paper, we relate the seemingly unrelated concepts of treewidth and boxicity. Our main result is that, for any graph G, boxicity(G) <= treewidth(G) + 2. We also show that this upper bound is (almost) tight. Our result leads to…

This work presents novel algorithms for learning Bayesian network structures with bounded treewidth. Both exact and approximate methods are developed. The exact method combines mixed-integer linear programming formulations for structure…