Related papers: Treewidth distance on phylogenetic trees
Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…
In this paper we extend the theory of bidimensionality to two families of graphs that do not exclude fixed minors: map graphs and power graphs. In both cases we prove a polynomial relation between the treewidth of a graph in the family and…
Decompositional parameters such as treewidth are commonly used to obtain fixed-parameter algorithms for NP-hard graph problems. For problems that are W[1]-hard parameterized by treewidth, a natural alternative would be to use a suitable…
Treewidth is a well-studied decompositional parameter to measure the tree-likeness of a graph. While the propositional satisfiability problem (SAT) is known to be tractable when parameterized by the treewidth of the underlying primal graph,…
The \emph{distance-number} of a graph $G$ is the minimum number of distinct edge-lengths over all straight-line drawings of $G$ in the plane. This definition generalises many well-known concepts in combinatorial geometry. We consider the…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
In this paper, we consider the notion of \emph{special treewidth}, recently introduced by Courcelle\cite{Courcelle2012}. In a special tree decomposition, for each vertex $v$ in a given graph, the bags containing $v$ form a rooted path. We…
Phylogenetic networks are rooted directed acyclic graphs that represent evolutionary relationships between species whose past includes reticulation events such as hybridisation and horizontal gene transfer. To search the space of…
We introduce a new parameter, called stretch-width, that we show sits strictly between clique-width and twin-width. Unlike the reduced parameters [BKW '22], planar graphs and polynomial subdivisions do not have bounded stretch-width. This…
Several different measures for digraph width have appeared in the last few years. However, none of them shares all the "nice" properties of treewidth: First, being \emph{algorithmically useful} i.e. admitting polynomial-time algorithms for…
We investigate a new width parameter, the fusion-width of a graph. It is a natural generalization of the tree-width, yet strong enough that not only graphs of bounded tree-width, but also graphs of bounded clique-width, trivially have…
Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on…
Treewidth is a parameter that measures how tree-like a relational instance is, and whether it can reasonably be decomposed into a tree. Many computation tasks are known to be tractable on databases of small treewidth, but computing the…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
The Graph Isomorphism problem restricted to graphs of bounded treewidth or bounded tree distance width are known to be solvable in polynomial time [Bod90],[YBFT99]. We give restricted space algorithms for these problems proving the…
Layered treewidth and row treewidth are recently introduced graph parameters that have been key ingredients in the solution of several well-known open problems. It follows from the definitions that the layered treewidth of a graph is at…
The minimal number of rooted subtree prune and regraft (rSPR) operations needed to transform one phylogenetic tree into another one induces a metric on phylogenetic trees - the rSPR-distance. The rSPR-distance between two phylogenetic trees…
In the companion paper [Linear rank-width of distance-hereditary graphs I. A polynomial-time algorithm, Algorithmica 78(1):342--377, 2017], we presented a characterization of the linear rank-width of distance-hereditary graphs, from which…
Many recent works address the question of characterizing induced obstructions to bounded treewidth. In 2022, Lozin and Razgon completely answered this question for graph classes defined by finitely many forbidden induced subgraphs. Their…
Tree-cut width is a parameter that has been introduced as an attempt to obtain an analogue of treewidth for edge cuts. Unfortunately, in spite of its desirable structural properties, it turned out that tree-cut width falls short as an…