English
Related papers

Related papers: Mathematical Modeling of Biofilm Development

200 papers

This paper presents an analytical investigation of the solutions to a control volume model for liquid films flowing down a vertical fibre. The evolution of the free surface is governed by a coupled system of degenerate nonlinear partial…

Analysis of PDEs · Mathematics 2024-02-13 Roman M. Taranets , Hangjie Ji , Marina Chugunova

We consider a system of many hard rods moving in one dimension. As it is an integrable system, it possesses an extensive number of conserved quantities and its evolution on macroscopic scale can be described by generalised hydrodynamics.…

Statistical Mechanics · Physics 2024-12-23 Mrinal Jyoti Powdel , Anupam Kundu

Over the last decades, many diffuse-interface Navier-Stokes Cahn-Hilliard models with non-matching densities have appeared in the literature. These models claim to describe the same physical phenomena, yet they are distinct from one…

Analysis of PDEs · Mathematics 2023-02-13 M. ten Eikelder , K. van der Zee , I. Akkerman , D. Schillinger

A model is developed describing the approach to a finite-time singularity of the Navier-Stokes equations for two interacting vortices. The model is derived from a combination of the Biot-Savart law and an equation describing the evolution…

Fluid Dynamics · Physics 2018-11-21 Keith Moffatt , Yoshifumi Kimura

To investigate the influence of inertia and slip on the instability of a liquid film on a fibre, a theoretical framework based on the axisymmetric Navier-Stokes equations is proposed via linear instability analysis. The model reveals that…

Fluid Dynamics · Physics 2024-02-02 Chengxi Zhao , Ran Qiao , Kai Mu , Ting Si , Xisheng Luo

We consider a macroscopic model for the growth of living tissues incorporating pressure-driven dispersal and pressure-modulated proliferation. Assuming a power-law relation between the mechanical pressure and the cell density, the model can…

Analysis of PDEs · Mathematics 2024-03-29 Tomasz Dębiec , Piotr Gwiazda , Błażej Miasojedow , Zuzanna Szymańska

A multidimensional model of biofilm growth present in the supernatant water of a Slow Sand Filter is derived. The multiphase model, consisting of solid and liquid phases, is written as a convection-reaction system with a Cahn-Hilliard-type…

Numerical Analysis · Mathematics 2025-04-08 Julio Careaga , Stefan Diehl , Jaime Manríquez

We introduce and analyze a partially augmented fully-mixed formulation and a mixed finite element method for the coupled problem arising in the interaction between a free fluid and a poroelastic medium. The flows in the free fluid and…

Numerical Analysis · Mathematics 2023-05-02 Tongtong Li , Sergio Caucao , Ivan Yotov

Epitaxial films evolve on time and length scales that are inaccessible to atomistic computer simulation methods like molecular dynamics (MD). To numerically predict properties for such systems, a common strategy is to employ kinetic Monte…

Materials Science · Physics 2020-04-08 William Janke , Thomas Speck

We introduce a diffuse interface model describing the evolution of a mixture of two different viscous incompressible fluids of equal density. The main novelty of the present contribution consists in the fact that the effects of temperature…

Analysis of PDEs · Mathematics 2014-01-15 Michela Eleuteri , Elisabetta Rocca , Giulio Schimperna

Several bacteria and bacteria strands form biofilms in different environmental conditions, e.g. pH, temperature, nutrients, etc. Biofilm growth, therefore, is an extremely robust process. Because of this, while biofilm growth is a complex…

In this paper we address some modelling issues related to biological growth. Our treatment is based on a recently-proposed, general formulation for growth within the context of Mixture Theory (Journal of the Mechanics and Physics of Solids,…

Tissues and Organs · Quantitative Biology 2011-11-09 H. Narayanan , E. M. Arruda , K. Grosh , K. Garikipati

A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…

Biological Physics · Physics 2010-10-05 Julia Pulwicki , David Hobill

Biofilms are complex structures which are inhabited by numerous amount of different species of microorganisms. Due to their ubiquity, they influence human life on an everyday basis. It is therefore important to understand the interactions…

Computational Engineering, Finance, and Science · Computer Science 2025-09-03 Felix Klempt , Hendrik Geisler , Meisam Soleimani , Philipp Junker

We present a quasi-two dimensional model of flowing soap films that bears striking similarity to the compressible Navier-Stokes equations. The variation in soap film thickness that is commonly used for flow visualization in experiments is…

Fluid Dynamics · Physics 2007-05-23 Petri Fast

We investigate a complex system involving multiple shapes to be optimized in a domain, taking into account geometric constraints on the shapes and uncertainty appearing in the physics. We connect the differential geometry of product shape…

Optimization and Control · Mathematics 2023-08-16 Caroline Geiersbach , Tim Suchan , Kathrin Welker

Modelling hydrodynamic lubrication is crucial in the design of engineering components as well as for a fundamental understanding of friction mechanisms. The cornerstone of thin-film flow modelling is the Reynolds equation -- a…

Fluid Dynamics · Physics 2022-03-08 Hannes Holey , Andrea Codrignani , Peter Gumbsch , Lars Pastewka

We prove that there exists a weak solution to a system governing an unsteady flow of a viscoelastic fluid in three dimensions, for arbitrarily large time interval and data. The fluid is described by the incompressible Navier-Stokes…

Analysis of PDEs · Mathematics 2020-07-22 Michal Bathory , Miroslav Bulíček , Josef Málek

Continuum fluid dynamic models based on the Navier-Stokes equations have previously been used to simulate granular media undergoing fluid-like shearing. These models, however, typically fail to predict the flow behaviour in confined…

Fluid Dynamics · Physics 2024-03-05 Duncan Dockar , M. H. Lakshminarayana Reddy , Matthew K. Borg , S. Kokou Dadzie

A model of submonolayer thin film growth is studied, where the attachment of atoms to island edges is hindered by an energy barrier. A novel behavior of the density of islands, N_s, is predicted as a function of flux F and temperature T.…

Materials Science · Physics 2009-10-31 Daniel Kandel