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In this article, we analyze a system modeling bacteriophage treatments for infections in a noisy context. In the small noise regime, we show that after a reasonable amount of time the system is close to a sane equilibrium (which is a…

Probability · Mathematics 2013-08-05 Xavier Bardina , David Bascompte , Carles Rovira , Samy Tindel

Bacteriophages are viruses infecting bacteria and archaea. Many phage species cause infections which lead to the certain death of the infected prokaryotic host cell and the release of a large batch of phage progeny, yet they have been able…

Populations and Evolution · Quantitative Biology 2019-12-24 Matthias M. Fischer

Phage therapy is an alternative treatment method for bacterial infections. It has shown particular promise in reducing bacterial load while preventing antibiotic resistance. Here, we develop a mathematical model of a bacterial infection…

Populations and Evolution · Quantitative Biology 2025-12-23 Rohan Shirur , Bryce Morsky

In this paper we describe the solution of a stochastic bistable system from a dynamical perspective. We show how a single framework with variable noise can explain hysteresis at zero temperature and two-state coexistence in the presence of…

Statistical Mechanics · Physics 2019-11-25 Mahendra K. Verma , Abhishek Kumar , Adhip Pattanayak

Cell systems consist of a huge number of various molecules that display specific patterns of interactions, which have a determining influence on the cell's functioning. In general, such complexity is seen to increase with the complexity of…

Biomolecules · Quantitative Biology 2014-03-14 Marianne Rooman , Jaroslav Albert , Mitia Duerinckx

In this paper we continue the stability analysis of the model for coinfection with density dependent susceptible population introduced in the 1st part of the paper. We look for coexistence equilibrium points, their stability and dependence…

Dynamical Systems · Mathematics 2021-02-12 J. Andersson , S. Ghersheen , V. Kozlov , V. Tkachev , U. Wennergren

We show that a bacteria and bacteriophage system with either a perfectly nested or a one-to-one infection network is permanent, a.k.a uniformly persistent, provided that bacteria that are superior competitors for nutrient devote the least…

Populations and Evolution · Quantitative Biology 2015-05-29 Daniel A. Korytowski , Hal L. Smith

Pathogen-mediated competition, through which an invasive species carrying and transmitting a pathogen can be a superior competitor to a more vulnerable resident species, is one of the principle driving forces influencing biodiversity in…

Populations and Evolution · Quantitative Biology 2009-11-13 Jaewook Joo , Eric Harvill , Reka Albert

Co-infecting parasites and pathogens remain a leading challenge for global public health due to their consequences for individual-level infection risk and disease progression. However, a clear understanding of the population-level…

Populations and Evolution · Quantitative Biology 2017-12-05 Erin E. Gorsich , Rampal S. Etienne , Jan Medlock , Brianna R. Beechler , Johannie M. Spaan , Robert S. Spaan , Vanessa O. Ezenwa , Anna E. Jolles

Models of biological processes are often subject to different sources of noise. Developing an understanding of the combined effects of different types of uncertainty is an open challenge. In this paper, we study a variant of the…

Populations and Evolution · Quantitative Biology 2018-03-28 Francisco Herrerías-Azcué , Tobias Galla

We perform a bifurcation analysis on an SIR model involving two pathogens that influences each other. Partial cross-immunity is assumed and coinfection is thought to be less transmittable then each of the diseases alone. The susceptible…

Dynamical Systems · Mathematics 2022-09-09 J. Andersson , V. Kozlov , V. G. Tkachev , U. Wennergren

Microbes are everywhere, including in and on our bodies, and have been shown to play key roles in a variety of prevalent human diseases. Consequently, there has been intense interest in the design of bacteriotherapies or "bugs as drugs,"…

Machine Learning · Statistics 2020-04-13 Travis E. Gibson , Georg K. Gerber

The human body consists of microbiomes associated with the development and prevention of several diseases. These microbial organisms form several complex interactions that are informative to the scientific community for explaining disease…

Methodology · Statistics 2024-04-16 Tejasv Bedi , Bencong Zhu , Michael L. Neugent , Kevin C. Lutz , Nicole J. De Nisco , Qiwei Li

This paper conducts research on the established model and presents the main conclusions . Firstly, by separately considering the infectivity of each of the two infectious diseases and the infectivity of the population simultaneously…

Populations and Evolution · Quantitative Biology 2025-03-13 Yang Liu

Traditional biomedical approaches treat diseases in isolation, but the importance of synergistic disease interactions is now recognized. As a first step we present and analyze a simple coinfection model for two diseases affecting…

Dynamical Systems · Mathematics 2015-04-21 Marcos Marvá , Ezio Venturino , Rafael Bravo de la Parra

We propose a new mathematical model to study the coinfection dynamics of COVID-19 and bacterial pneumonia. Our model includes two infection ways for pneumonia, corresponding to community-acquired and hospital-acquired infections. We show…

Populations and Evolution · Quantitative Biology 2022-12-13 Angel G. C. Pérez , David A. Oluyori

Bacteria and their viruses ("bacteriophages") coexist in natural environments forming complex infection networks. Recent empirical findings suggest that phage-bacteria infection networks often possess a nested structure such that there is a…

Populations and Evolution · Quantitative Biology 2013-04-09 Luis F. Jover , Michael H. Cortez , Joshua S. Weitz

Phages use bacterial host resources to replicate, intrinsically linking phage and host survival. To understand phage dynamics, it is essential to understand phage-host ecology. A key step in this ecology is infection of bacterial hosts.…

Populations and Evolution · Quantitative Biology 2025-01-08 Jaye Sudweeks , Christoph Hauert

An SIR model with the coinfection of the two infectious agents in a single host population is considered. The model includes the environmental carry capacity in each class of population. A special case of this model is analyzed and several…

Dynamical Systems · Mathematics 2019-05-14 Samia Ghersheen , Vladimir Kozlov , Vladimir G. Tkachev , Uno Wennergren

Bistable biological regulatory systems need to cope with stochastic noise to fine-tune their function close to bifurcation points. Here, we study stability properties of this regime in generic systems to demonstrate that cooperative…

Adaptation and Self-Organizing Systems · Physics 2025-08-04 Daniele Proverbio , Arthur N. Montanari , Alexander Skupin , Jorge Gonçalves
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