Related papers: The Hybrid k-Deck Problem: Reconstructing Sequence…
In social network analysis, the size of the k-core, i.e., the maximal induced subgraph of the network with minimum degree at least k, is frequently adopted as a typical metric to evaluate the cohesiveness of a community. We address the…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
Tracking of moving objects is crucial to security systems and networks. Given a graph $G$, terminal vertices $s$ and $t$, and an integer $k$, the \textsc{Tracking Paths} problem asks whether there exists at most $k$ vertices, which if…
The $k$-Detour problem is a basic path-finding problem: given a graph $G$ on $n$ vertices, with specified nodes $s$ and $t$, and a positive integer $k$, the goal is to determine if $G$ has an $st$-path of length exactly $\text{dist}(s, t) +…
In the $k$-mismatch problem, given a pattern and a text of length $n$ and $m$ respectively, we have to find if the text has a sub-string with a Hamming distance of at most $k$ from the pattern. This has been studied in the classical setting…
A vertex subset $I$ of a graph $G$ is called a $k$-path vertex cover if every path on $k$ vertices in $G$ contains at least one vertex from $I$. The \textsc{$k$-Path Vertex Cover Reconfiguration ($k$-PVCR)} problem asks if one can transform…
The k-forest problem is a common generalization of both the k-MST and the dense-$k$-subgraph problems. Formally, given a metric space on $n$ vertices $V$, with $m$ demand pairs $\subseteq V \times V$ and a ``target'' $k\le m$, the goal is…
In this work we investigate the min-max-min robust optimization problem and the k-adaptability robust optimization problem for binary problems with uncertain costs. The idea of the first approach is to calculate a set of k feasible…
In this paper we consider the problem of encoding data into \textit{repeat-free} sequences in which sequences are imposed to contain any $k$-tuple at most once (for predefined $k$). First, the capacity of the repeat-free constraint are…
We study two variants of the shortest path problem. Given an integer k, the k-color-constrained and the k-interchange-constrained shortest path problems, respectively seek a shortest path that uses no more than k colors and one that makes…
DNA-based storage offers unprecedented density and durability, but its scalability is fundamentally limited by the efficiency of parallel strand synthesis. Existing methods either allow unconstrained nucleotide additions to individual…
Given a graph $G$ and two spanning trees $T$ and $T'$ in $G$, Spanning Tree Reconfiguration asks whether there is a step-by-step transformation from $T$ to $T'$ such that all intermediates are also spanning trees of $G$, by exchanging an…
In the Graph Reconstruction (GR) problem, the goal is to recover a hidden graph by utilizing some oracle that provides limited access to the structure of the graph. The interest is in characterizing how strong different oracles are when the…
In the trace reconstruction problem, one observes the output of passing a binary string $s \in \{0,1\}^n$ through a deletion channel $T$ times and wishes to recover $s$ from the resulting $T$ "traces." Most of the literature has focused on…
The minimum k-partition problem is a challenging combinatorial problem with a diverse set of applications ranging from telecommunications to sports scheduling. It generalizes the max-cut problem and has been extensively studied since the…
In this paper, we investigate the reconstruction of permutations on {1, 2, ..., n} from betweenness constraints involving the minimum and the maximum element located between t and t+1, for all t=1, 2, ..., n-1. We propose two variants of…
We recently introduced the graph invariant twin-width, and showed that first-order model checking can be solved in time $f(d,k)n$ for $n$-vertex graphs given with a witness that the twin-width is at most $d$, called $d$-contraction sequence…
The problem of reconstructing a sequence of independent and identically distributed symbols from a set of equal size, consecutive, fragments, as well as a dependent reference sequence, is considered. First, in the regime in which the…
Let $\mathcal{Q}$ be a vertex subset problem on graphs. In a reconfiguration variant of $\mathcal{Q}$ we are given a graph $G$ and two feasible solutions $S_s, S_t\subseteq V(G)$ of $\mathcal{Q}$ with $|S_s|=|S_t|=k$. The problem is to…
This paper studies the problem of encoding messages into sequences which can be uniquely recovered from some noisy observations about their substrings. The observed reads comprise consecutive substrings with some given minimum overlap. This…