Related papers: The Hybrid k-Deck Problem: Reconstructing Sequence…
The cage problem concerns finding $(k,g)$-graphs, which are $k$-regular graphs with girth $g$, of the smallest possible number of vertices. The central goal is to determine $n(k,g)$, the minimum order of such a graph, and to identify…
We revisit the complexity of approximate pattern matching in an elastic-degenerate string. Such a string is a sequence of $n$ finite sets of strings of total length $N$, and compactly describes a collection of strings obtained by first…
Let us call a sequence of numbers heapable if they can be sequentially inserted to form a binary tree with the heap property, where each insertion subsequent to the first occurs at a leaf of the tree, i.e. below a previously placed number.…
The deletion distance between two binary words $u,v \in \{0,1\}^n$ is the smallest $k$ such that $u$ and $v$ share a common subsequence of length $n-k$. A set $C$ of binary words of length $n$ is called a $k$-deletion code if every pair of…
Given a set $P$ of $n$ points in $\mathbf{R}^d$, and a positive integer $k \leq n$, the $k$-dispersion problem is that of selecting $k$ of the given points so that the minimum inter-point distance among them is maximized (under Euclidean…
The numerical solution of eigenvalue problems is essential in various application areas of scientific and engineering domains. In many problem classes, the practical interest is only a small subset of eigenvalues so it is unnecessary to…
For a set of positive integers $D$, a $k$-term $D$-diffsequence is a sequence of positive integers $a_1<a_2<\cdots<a_k$ such that $a_i-a_{i-1}\in D$ for $i=2,3,\cdots,k$. For $k\in\mathbb{Z}^+$ and $D\subset \mathbb{Z}^+$, we define…
In distance query reconstruction, we wish to reconstruct the edge set of a hidden graph by asking as few distance queries as possible to an oracle. Given two vertices $u$ and $v$, the oracle returns the shortest path distance between $u$…
This study develops an algorithm to solve a variation of the Shortest Common Superstring (SCS) problem. There are two modifications to the base SCS problem. First, one string in the set S is allowed to have up to K mistakes, defined as not…
Let $T=(V,E)$ be a tree with associated costs on its subtrees. A minmax $k$-partition of $T$ is a partition into $k$ subtrees, minimizing the maximum cost of a subtree over all possible partitions. In the centered version of the problem,…
We consider the algorithmic problem of generating each subset of $[n]:=\{1,2,\ldots,n\}$ whose size is in some interval $[k,l]$, $0\leq k\leq l\leq n$, exactly once (cyclically) by repeatedly adding or removing a single element, or by…
For a set of $n$ points in $\Re^d$, and parameters $k$ and $\eps$, we present a data structure that answers $(1+\eps,k)$-\ANN queries in logarithmic time. Surprisingly, the space used by the data-structure is $\Otilde (n /k)$; that is, the…
We study the fundamental problem of clustering $n$ points into $K$ groups drawn from a mixture of isotropic Gaussians in $\mathbb{R}^d$. Specifically, we investigate the requisite minimal distance $\Delta$ between mean vectors to partially…
As DNA data storage moves closer to practical deployment, minimizing sequencing coverage depth is essential to reduce both operational costs and retrieval latency. This paper addresses the recently studied Random Access Problem, which…
We study the problem of finding the smallest set of nodes in a network whose removal results in an empty $k$-core; where the $k$-core is the sub-network obtained after the iterative removal of all nodes of degree smaller than $k$. This…
In this paper, we revisit the problem of indexing multi-dimensional data in memory for the efficient support of multi-dimensional range queries and nearest neighbor queries. This is a classic problem in main-memory databases, where there is…
Top-k query processing finds a list of k results that have largest scores w.r.t the user given query, with the assumption that all the k results are independent to each other. In practice, some of the top-k results returned can be very…
The $\ell$-deck of a graph $G$ is the multiset of all induced subgraphs of $G$ on $\ell$ vertices. We say that a graph is reconstructible from its $\ell$-deck if no other graph has the same $\ell$-deck. In 1957, Kelly showed that every tree…
Motivated by many applications, we study clustering with a faulty oracle. In this problem, there are $n$ items belonging to $k$ unknown clusters, and the algorithm is allowed to ask the oracle whether two items belong to the same cluster or…
We study the reverse shortest path problem on disk graphs in the plane. In this problem we consider the proximity graph of a set of $n$ disks in the plane of arbitrary radii: In this graph two disks are connected if the distance between…