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Bacterial conglomerates such as biofilms and microcolonies are ubiquitous in nature and play an important role in industry and medicine. In contrast to well-mixed, diluted cultures routinely used in microbial research, bacteria in a…

Biological Physics · Physics 2017-01-13 Fred F. Farrell , Matti Gralka , Oskar Hallatschek , Bartlomiej Waclaw

We investigate how the pattern of contacts between species in mutualistic ecosystems is affected by the phylogenetic proximity between the species of each guild. We develop several theoretical tools to measure that effect and we use them to…

Populations and Evolution · Quantitative Biology 2010-08-02 R. P. J. Perazzo , Laura Hernández , Horacio Ceva , Enrique Burgos , José Ignacio Alvarez-Hamelin

We consider the lifetimes of metastable states in bistable evolutionary games (coordination games), and examine how they are affected by spatial structure. A semiclassical approximation based on a path integral method is applied to…

Populations and Evolution · Quantitative Biology 2014-12-01 Kohaku H. Z. So , Hisashi Ohtsuki , Takeo Kato

The problem of evolutionary complexification of life is considered one of the fundamental aspects in contemporary evolutionary theory. Parasitism is ubiquitous, inevitable, and arises as soon as the first replicators appear, even during the…

Molecular Networks · Quantitative Biology 2024-01-01 Alexander Spirov

Context: Star clusters form within giant molecular clouds that are strongly altered by the feedback action of the massive stars, but the cluster still remains embedded in a dense, highly turbulent medium and interactions with ambient…

Astrophysics of Galaxies · Physics 2022-11-16 Paolo Suin , Steven N. Shore , Václav Pavlík

Multipartite viruses replicate through a puzzling evolutionary strategy. Their genome is segmented into two or more parts, and encapsidated in separate particles that appear to propagate independently. Completing the replication cycle,…

Physics and Society · Physics 2019-03-26 Eugenio Valdano , Susanna Manrubia , Sergio Gómez , Alex Arenas

The spatial dispersal of individuals is known to play an important role in the dynamics of populations, and is central to metapopulation theory. At the same time, local adaptation to environmental conditions creates a geographic mosaic of…

Populations and Evolution · Quantitative Biology 2017-09-25 Justin D. Yeakel , Jean P. Gibert , Peter A. H. Westley , Jonathan W. Moore

How large ecosystems can create and maintain the remarkable biodiversity we see in nature is probably one of the biggest open questions in science, attracting attention from different fields, from Theoretical Ecology to Mathematics and…

Populations and Evolution · Quantitative Biology 2023-01-03 Violeta Calleja-Solanas , Nagi Khalil , Jesús Gómez-Gardeñes , Emilio Hernández-García , Sandro Meloni

Eco-evolutionary frameworks can explain certain features of communities in which ecological and evolutionary processes occur over comparable timescales. Here, we investigate whether an evolutionary dynamics may interact with the spatial…

Populations and Evolution · Quantitative Biology 2019-12-04 Eduardo H. Colombo , Ricardo Martínez-García , Cristóbal , López , Emilio Hernández-García

The role of dispersal on the stability and synchrony of a metacommunity is a topic of considerable interest in theoretical ecology. Dispersal is known to promote both synchrony, which enhances the likelihood of extinction, and spatial…

Populations and Evolution · Quantitative Biology 2022-04-06 Snehasish Roy Chowdhury , Ramesh Arumugam , Wei Zou , V. K. Chandrasekar , D. V. Senthilkumar

The expansion of biological species in natural environments is usually described as the combined effect of individual spatial dispersal and growth. In the case of aquatic ecosystems flow transport can also be extremely relevant as an extra,…

Biological Physics · Physics 2016-08-30 Francesca Tesser , Jos C. H. Zeegers , Herman J. H. Clercx , Luc Brunsveld , Federico Toschi

Resource competition is a fundamental interaction in natural communities.However little is known about competition in spatial environments where organisms are able to regulate resource distributions. Here, we analyze the competition of two…

Populations and Evolution · Quantitative Biology 2011-02-24 Alexei B. Ryabov , Bernd Blasius

Here, we study the evolution of specialization using realistic computer simulations of bacteria that secrete two public goods in a dynamic fluid. Through this first principles approach, we find physical factors such as diffusion, flow…

Populations and Evolution · Quantitative Biology 2020-02-03 Gurdip Uppal , Dervis Can Vural

Living systems evolve one mutation at a time, but a single mutation can alter the effect of subsequent mutations. The underlying mechanistic determinants of such epistasis are unclear. Here, we demonstrate that the physical dynamics of a…

Populations and Evolution · Quantitative Biology 2019-10-22 Kabir Husain , Arvind Murugan

Frequency-dependent selection reflects the interaction between different species as they battle for limited resources in their environment. In a stochastic evolutionary game the species relative fitnesses guides the evolutionary dynamics…

Probability · Mathematics 2020-12-29 Lea Popovic , Liam Peuckert

Global environmental change is affecting species distribution and their interactions with other species. In particular, the main drivers of environmental change strongly affect the strength of interspecific interactions with considerable…

Populations and Evolution · Quantitative Biology 2013-08-19 Serguei Saavedra , Rudolf P. Rohr , Vasilis Dakos , Jordi Bascompte

We investigate the dynamics of dual disease epidemics within the spatial rock-paper-scissors model. In this framework, individuals from all species are equally susceptible to infection by two distinct pathogens transmitted via…

Populations and Evolution · Quantitative Biology 2025-05-13 J. Menezes , R. Menezes , S. Batista , E. Rangel

Spatially explicit models have been widely used in today's mathematical ecology and epidemiology to study persistence and extinction of populations as well as their spatial patterns. Here we extend the earlier work--static dispersal between…

Populations and Evolution · Quantitative Biology 2009-07-01 Quan-Xing Liu , Rong-Hua Wang , Zhen Jin

We investigate the effects of cooperativity between contagion processes that spread and persist in a host population. We propose and analyze a dynamical model in which individuals that are affected by one transmissible agent $A$ exhibit a…

Physics and Society · Physics 2017-11-22 Li Chen , Fakhteh Ghanbarnejad , Dirk Brockmann

Numerous experimental studies have demonstrated that the microenvironment is a key regulator influencing the proliferative and migrative potentials of species. Spatial and temporal disturbances lead to adverse and hazardous…

Populations and Evolution · Quantitative Biology 2015-10-07 Venkata. S. K. Manem , Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan
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