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Spiking neural networks (SNNs) have shown a potential for having low energy with unsupervised learning capabilities due to their biologically-inspired computation. However, they may suffer from accuracy degradation if their processing is…
We proposed a novel approach to coherent imaging of dynamic samples. The inter-frame similarity of the sample's local structures is found to be a powerful constraint in phasing a sequence of diffraction patterns. We devised a new image…
Decision trees are considered one of the most powerful tools for data classification. Accelerating the decision tree search is crucial for on-the-edge applications that have limited power and latency budget. In this paper, we propose a…
In this paper, we propose a sustainable long short-term memory (LSTM)-based precoding framework for reconfigurable intelligent surface (RIS)-assisted millimeter-wave (mmWave) MIMO systems. Instead of explicit channel state information (CSI)…
We present new Recurrent Neural Network (RNN) cells for image classification using a Neural Architecture Search (NAS) approach called DARTS. We are interested in the ReNet architecture, which is a RNN based approach presented as an…
In the High-Luminosity Large Hadron Collider (HL-LHC), one of the most challenging computational problems is expected to be finding and fitting charged-particle tracks during event reconstruction. The methods currently in use at the LHC are…
Various methods have been developed to analyze the association between organisms and their genomic sequences. Among them, sequence alignment is the most frequently used for comparative analysis of biological genomes. However, the…
Computing-in-Memory architectures based on non-volatile emerging memories have demonstrated great potential for deep neural network (DNN) acceleration thanks to their high energy efficiency. However, these emerging devices can suffer from…
Compressive sensing magnetic resonance imaging (CS-MRI) accelerates the acquisition of MR images by breaking the Nyquist sampling limit. In this work, a novel generative adversarial network (GAN) based framework for CS-MRI reconstruction is…
Pairwise sequence alignment is a very time-consuming step in common bioinformatics pipelines. Speeding up this step requires heuristics, efficient implementations, and/or hardware acceleration. A promising candidate for all of the above is…
Memory disaggregation is an emerging data center architecture that improves resource utilization and scalability. Replication is key to ensure the fault tolerance of applications, but replicating shared data in disaggregated memory is hard.…
Convolutional neural networks (CNNs) play a key role in deep learning applications. However, the large storage overheads and the substantial computation cost of CNNs are problematic in hardware accelerators. Computing-in-memory (CIM)…
Data replication technologies enable efficient and highly-available data access, thus gaining more and more interests in both the academia and the industry. However, data replication introduces the problem of data consistency. Modern…
We introduce an algorithm for the alignment of protein- coding sequences accounting for frameshifts. The main specificity of this algorithm as compared to previously published protein-coding sequence alignment methods is the introduction of…
Motivation: Seed filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. Read mappers 1) quickly…
Genome sequence analysis is a powerful tool in medical and scientific research. Considering the inevitable sequencing errors and genetic variations, approximate string matching (ASM) has been adopted in practice for genome sequencing.…
Compute-In-Memory (CIM) systems, particularly those utilizing ReRAM and memristive technologies, offer a promising path toward energy-efficient neural network computation. However, conventional quantization and compression techniques often…
The performance of today's in-memory indexes is bottlenecked by the memory latency/bandwidth wall. Processing-in-memory (PIM) is an emerging approach that potentially mitigates this bottleneck, by enabling low-latency memory access whose…
Resistive Random-Access-Memory (ReRAM) crossbar is a promising technique for deep neural network (DNN) accelerators, thanks to its in-memory and in-situ analog computing abilities for Vector-Matrix Multiplication-and-Accumulations (VMMs).…
Calculating the similarities between a pair of genomic sequences is one of the most fundamental computational steps in genomic analysis. This step -- called sequence alignment -- is the computational bottleneck because: (1) it is…